Results for “grantr”

Infer gene regulatory networks (GRNs) from expression matrices using arboreto's scalable GRNBoost2 and GENIE3 tree-ensemble algorithms with Dask-distributed computation. Use when analyzing bulk or single-cell RNA-seq transcriptomics to map transcription-factor-to-target-gene regulatory interactions, build adjacency networks, or run the GRN-inference step of a SCENIC pipeline on large datasets. Part of the AlterLab Academic Skills suite.

Generates editable diagram source code (Mermaid, Graphviz DOT, PlantUML, SVG) from natural language, code, schemas, or notes for flowcharts, sequence diagrams, ER diagrams, architecture diagrams, and more. Renders to PNG/SVG/PDF on request via a local Python script.

Builds and validates DeepStream GStreamer pipelines through an interactive questionnaire and a BM25 retrieval engine over 270+ verified pipelines.