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Results for “grnboost2”

3 skills
alterlab-ieu
alterlab-arboreto
Infer gene regulatory networks (GRNs) from expression matrices using arboreto's scalable GRNBoost2 and GENIE3 tree-ensemble algorithms with Dask-distributed computation. Use when analyzing bulk or single-cell RNA-seq transcriptomics to map transcription-factor-to-target-gene regulatory interactions, build adjacency networks, or run the GRN-inference step of a SCENIC pipeline on large datasets. Part of the AlterLab Academic Skills suite.
60 · bundle
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livelybug
land-and-deploy
Land and deploy workflow. (gstack)
0 · bundle
kk20300113-png
land-and-deploy
Land and deploy workflow. Merges the PR, waits for CI and deploy, verifies production health via canary checks. Takes over after /ship creates the PR. Use when: "merge", "land", "deploy", "merge and verify", "land it", "ship it to production". (gstack)
0