Results for “pacsomatic”

5 skills

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

30.2k · bundle

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implementing-immutable-backup-with-restic

Implements immutable backup strategy using restic with S3-compatible storage and object lock for ransomware-resistant data protection, automating backup creation, integrity verification, snapshot retention, and restore testing.

24.6k · bundle

building-ioc-defanging-and-sharing-pipeline

Build an automated pipeline to defang indicators of compromise (URLs, IPs, domains, emails) for safe sharing and distribute them in STIX format through TAXII feeds and threat intelligence platforms.

24.6k · bundle

matlab-install-products

Deterministic workflow to download MATLAB Package Manager (mpm) and install MathWorks products from the OS command line with consistent, repeatable behavior. Use when installing MATLAB, Simulink, toolboxes, or support packages via command line, or setting up scripted installations for CI/CD, containers, or fleet provisioning.

Self-hosted open-source collaboration platform — chat, bots, webhooks, plugins, AI integration, Slack/Teams alternative with full data control. Triggers on: 'mattermost', 'self-hosted slack alternative', 'open source teams alternative', 'mattermost bot', 'mattermost webhook', 'mattermost plugin', 'mattermost API', 'mattermost integration', 'AI agent mattermost', 'deploy mattermost', 'mattermost docker', 'mattermost kubernetes', 'enterprise chat self-hosted', 'mattermost AI features', 'mattermost incoming webhook', 'mattermost slash command'.