Results for “samtools”

Create a SAM.gov search monitor from a pursuit or expiring row — persists to Pipeline and writes sam_monitor.md in the pursuit folder. Primary admin rote task for capture managers watching recompetes.

Identifies operational toil, prioritizes automation by ROI, and provides patterns for self-healing systems and runbook automation.

Use when converting NCBI dbSNP docsum XML into flat tabular rows through the bundled `snp2hgvs | hgvs2spdi | spdi2tbl` pipeline.

Use this skill when conditioning, loading, preparing, or labeling signal data for analysis or ML training. Covers: cleaning a single signal (fill gaps, remove drift, deoutlier, denoise, resample/align a time base) BEFORE analysis; building a `signalDatastore` pipeline; creating a `labeledSignalSet` for Signal Labeler; deriving labels (filename, folder, in-file, ROI, time-frequency ROI); stratified train/val/test splits; framing long signals; parallel processing; and shaping datastore output for `trainnet`. Triggers include "clean up this signal", "remove drift / detrend", "fill gaps", "remove spikes / outliers", "denoise", "resample to a uniform rate", "align channels", "labels from filenames", "stratified split", "prepare for Signal Labeler", and function names like `fillgaps`, `fillmissing`, `detrend`, `filloutliers`, `smoothdata`, `resample`, `synchronize`, `signalDatastore`, `labeledSignalSet`, `filenames2labels`, `folders2labels`, `splitlabels`, `framesig`, `framelbl`, `createDatastores`.

Automates the collection of suspicious files from endpoints and email gateways, submission to sandbox and multi-engine scanners, and generation of verdicts with IOCs for SIEM integration.

Configure Okta as a SAML 2.0 Identity Provider and implement SP-initiated and IdP-initiated SSO flows with attribute mapping, assertion encryption, and security hardening.

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

Remote-control tmux sessions for interactive CLIs by sending keystrokes and scraping pane output.