Results for “nf-core-sarek”

Validates inputs, generates samplesheets and launch scripts, and optionally executes nf-core/pacsomatic matched tumor-normal workflows from BAM files, supporting local runs and scheduler submission (LSF/Slurm/PBS/SGE).

Build video analytics pipelines using NVIDIA DeepStream SDK 9.0 with Python pyservicemaker API, including GStreamer-based video processing, TensorRT inference integration, object detection/tracking, and Kafka/message broker integration.

Build, run, and debug Nextflow data pipelines and nf-core workflows end to end, covering processes, channels, operators, configuration, testing, and deployment to HPC or cloud.

Store and process large N-dimensional arrays with chunking, compression, and parallel I/O, integrating with NumPy, Dask, and Xarray for cloud-native scientific computing.

Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.