Results for “structure”

Design RESTful and GraphQL APIs following current best practices for naming, versioning, error shapes, and auth patterns. Use when the user says "design an API", "create endpoints", "structure my API responses", "plan API architecture", "REST vs GraphQL", or "API contract".

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Drafts SEC Form 10-K Annual Reports under the Securities Exchange Act of 1934. Structures all four Parts with Regulation S-K compliance and GAAP financial integration. Use when drafting 10-K filings, annual reports, or public company annual SEC disclosures.

Manages Coda documents via the REST API v1, including listing, creating, updating, deleting docs, managing tables, rows, pages, triggering automations, and exploring doc structure. Requires a CODA_API_TOKEN environment variable and explicit confirmation for destructive operations.

Creates an integration testing plan for .NET data access artifacts during Oracle-to-PostgreSQL database migrations, analyzing a project to identify repositories, DAOs, and service layers that interact with the database, then producing a structured testing plan.

Logging in Acorn/WordPress — Log::debug(), Log::error(), Log::channel(), custom log channels, daily log files, stack channel, Slack log notifications, exception handling logging, WordPress debug.log integration, WP_DEBUG_LOG, structured logging, context arrays, monolog handlers, log levels, emergency info warning error debug, lando logs, lando ssh tail log

Process a meeting transcript (Google Drive file URL or pasted text) into structured action items + decisions. Routes owners per operations.md, syncs to Notion `${BRAND}_MEETINGS_DB` + `${BRAND}_ACTIONS_DB`, sends Slack DMs to owners, drafts follow-up Gmail for client/sales meetings. Event-triggered (new transcript lands in Google Drive) or on-demand.

Query PubChem via the PUG-REST API and PubChemPy across 110M+ compounds, searching by name, CID, or SMILES and retrieving molecular properties, bioactivity, and similarity/substructure matches. Use when looking up a chemical compound, converting names/SMILES to CIDs, fetching physicochemical properties, or running cheminformatics structure searches. Part of the AlterLab Academic Skills suite.

Use for writing, configuring, integrating, reviewing, debugging, or testing Python structured logging with structlog. Trigger for bound loggers, event dictionaries, processor chains, JSON or console rendering, standard-library logging integration, contextvars, request correlation, exception rendering, and structlog test capture. Do not use for stdlib-logging-only, Loguru-only, metrics-only, tracing-only, or collector configuration tasks that do not use structlog.

Winston - versatile logging library for Node.js with multiple transports, custom formatting, and log rotation. Supports structured logging, custom levels, and enterprise integration. USE WHEN: user mentions "winston", "node.js logging", "multiple transports", "log rotation", asks about "how to log to multiple destinations", "rotate log files in Node.js", "custom log formats" DO NOT USE FOR: Pino logging - use `pino` instead, Python logging - use `python-logging` instead, Java logging - use `slf4j` or `logback` instead

Query BindingDB for measured protein-ligand binding affinities (Ki, Kd, IC50, EC50) via its keyless REST API or the full TSV download, searching by target (UniProt ID), compound (SMILES), or pathogen. Use when looking up experimental binding constants, profiling inhibitors of a protein target, doing lead optimization, polypharmacology analysis, or structure-activity relationship (SAR) studies; for curated bioactivity mining or drug-like compound library screening at scale prefer alterlab-chembl instead. Part of the AlterLab Academic Skills suite.

Query the EMBL-EBI InterPro REST API for protein family, domain, and functional-site annotations integrated from member databases (Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, CDD, ProSite, NCBIfam, and others). Use when predicting protein function, analyzing or comparing domain architecture, classifying a protein by family or homologous superfamily, resolving a Pfam/InterPro accession, or mapping a protein's signatures to GO terms. Not for raw UniProt entry/FASTA retrieval or AlphaFold 3D structures. Part of the AlterLab Academic Skills suite.

Query the GTEx (Genotype-Tissue Expression) portal v2 REST API for tissue-specific gene expression (median TPM across 54 human tissues), expression QTLs (eQTLs), and splicing QTLs (sQTLs). Use when checking which tissues express a gene, finding which gene a non-coding/GWAS variant regulates via eQTLs, or interpreting variant regulatory effects across tissues. NOT for curated trait-variant associations (use alterlab-gwas), population allele frequencies or variant constraint (use alterlab-gnomad), or gene/transcript structure and ID mapping (use alterlab-ensembl). Part of the AlterLab Academic Skills suite.