Results for “sui”

Provide direct REST API access to UniProt (Swiss-Prot/TrEMBL) for protein sequence searches, FASTA retrieval, functional annotations (GO terms, domains), and cross-database ID mapping. Use when looking up a protein entry, fetching a protein FASTA sequence, or mapping accessions between databases over raw HTTP/REST; for EXPERIMENTAL 3D structures prefer alterlab-pdb, for AI-PREDICTED 3D structures prefer alterlab-alphafold-db, for protein-protein interaction networks prefer alterlab-string-db, and for Python workflows spanning many databases prefer bioservices instead. Part of the AlterLab Academic Skills suite.

Turbine — small Kotlin testing library for kotlinx.coroutines Flows. Provides ergonomic API to test Flow emissions deterministically: awaitItem, expectMostRecentItem, awaitComplete, awaitError. Works with StateFlow, SharedFlow, Channel-backed flows, combine/map/debounce. KMP-friendly. USE WHEN: user mentions "Turbine", "app.cash.turbine", ".test {}", "awaitItem", "Flow testing", "StateFlow test", "SharedFlow test", "expectMostRecentItem", "cancelAndIgnoreRemainingEvents" DO NOT USE FOR: Mobile E2E - use `testing/maestro` DO NOT USE FOR: Compose snapshot - use `testing/compose-snapshot` DO NOT USE FOR: Generic Kotlin testing - use `testing/kotest` DO NOT USE FOR: Suspend function (non-Flow) testing - use `kotlinx-coroutines-test` directly

proptest — property-based testing for Rust (Hypothesis-style). Generates thousands of random inputs to find counterexamples to invariants, with shrinking to minimal failing case. Critical for crypto, parsers, state machines, and finance code where edge cases matter. Includes strategies (gen functions), regression tracking, and integration with cargo test. Alternative: quickcheck (simpler API, less powerful). USE WHEN: user mentions "proptest", "property-based test", "proptest!", "Strategy", "Arbitrary", "shrink", "quickcheck", "regression file", "fuzz-light", "proptest-derive" DO NOT USE FOR: Generic Rust unit tests - use `testing/rust-testing` DO NOT USE FOR: Fuzzing with mutator (cargo-fuzz, AFL) - use bitcoin/testing/fuzz DO NOT USE FOR: KMP property testing - use `testing/kotest` (has built-in property)

Arti — pure-Rust implementation of the Tor anonymity network, by Tor Project. Embeddable Tor client (no system Tor daemon needed), provides SOCKS proxy and programmatic API for connecting to .onion services or routing clearnet traffic through Tor. Used by privacy-respecting wallets (BHODL-style), messenger apps, and any Rust app needing anonymity. Ships as library (arti-client crate) or standalone CLI. USE WHEN: user mentions "arti", "Tor in Rust", "embedded Tor", "arti-client", "Tor circuit Rust", "onion service Rust", "TorClient", "BridgeConfig", "PreferredRuntime" DO NOT USE FOR: Bitcoin Core + Tor configuration - use `bitcoin/privacy/tor` DO NOT USE FOR: Browsing via Tor Browser - end-user tool, not dev DO NOT USE FOR: TLS configuration - use `network/rustls`

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.