Results for “celltypist”

Generate a complete TypeSpec declarative agent with instructions, capabilities, and conversation starters for Microsoft 365 Copilot.

Provides deep generative models for single-cell omics analysis, including probabilistic batch correction, transfer learning, differential expression, and multi-modal integration.

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.

Model and solve LP, MILP, and QP problems using NVIDIA cuOpt's GPU-accelerated solver via Python, C/C++, or CLI interfaces.

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Reads, searches, and posts to X/Twitter from the command line using cookies or Sweetistics.

Simulator.Company actor (record) specialist. Use when the user wants to create, update, read, search, or filter the *instances* of a form template (a.k.a. Account Template records) — i.e. data-bearing actors — and needs the `data` value protocol right. Activate when the user says "create an actor", "add a record", "create a record from this template", "fill in a form", "update actor data", "find actors where field = …", "filter actors by balance", "создай актор", "заполни шаблон", or "добавь запись". ALSO use this skill when the user asks what **processes / functions / Corezoid processes** an actor has or can call, or about an actor's **shared API keys / available functions** — call `getCorezoidProcesses`: "what processes/functions can this actor call", "actor's connected processes", "actor's API keys", "available functions of the actor", "які процеси/функції доступні актору", "процеси актора", "функції актора", "ключі доступу актора", "какие процессы/функции у актора", "процессы актора", "доступные функции а