Results for “fasta”

Provides RESTful API design patterns and best practices for creating endpoints, designing APIs, and implementing routes.

Provides RESTful API design patterns and best practices for creating endpoints, designing APIs, and implementing routes.

Apache Avro data serialization reference. Covers schema definition, primitive and complex types, logical types, schema evolution and compatibility rules, Confluent Schema Registry, Python/fastavro usage, Kafka integration, and Spark/Flink connectors.

Use this when designing or scaffolding a Python API service, endpoint structure, request validation approach, handler layout, or API-specific service patterns in FastAPI, Flask-style, or similar Python backends.

Import Figma designs into HyperFrames compositions as frozen assets, brand tokens, components, motion animations, and shaders.

Provide direct REST API access to UniProt (Swiss-Prot/TrEMBL) for protein sequence searches, FASTA retrieval, functional annotations (GO terms, domains), and cross-database ID mapping. Use when looking up a protein entry, fetching a protein FASTA sequence, or mapping accessions between databases over raw HTTP/REST; for EXPERIMENTAL 3D structures prefer alterlab-pdb, for AI-PREDICTED 3D structures prefer alterlab-alphafold-db, for protein-protein interaction networks prefer alterlab-string-db, and for Python workflows spanning many databases prefer bioservices instead. Part of the AlterLab Academic Skills suite.

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Protect APIs from abuse and resource exhaustion by implementing rate limiting with token bucket, sliding window, and fixed window algorithms using Redis-backed counters, API gateway plugins, or application middleware.

Query the EMBL-EBI InterPro REST API for protein family, domain, and functional-site annotations integrated from member databases (Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, CDD, ProSite, NCBIfam, and others). Use when predicting protein function, analyzing or comparing domain architecture, classifying a protein by family or homologous superfamily, resolving a Pfam/InterPro accession, or mapping a protein's signatures to GO terms. Not for raw UniProt entry/FASTA retrieval or AlphaFold 3D structures. Part of the AlterLab Academic Skills suite.

Starlette 1.0 ASGI framework reference with working code examples for every feature. Use this skill whenever writing Starlette applications, building ASGI middleware, working with FastAPI internals, or writing async Python web services. Also trigger when the user mentions Starlette, ASGI, or needs help with routing, WebSockets, middleware, lifespan handlers, or test clients in the Starlette ecosystem — even if they don't name Starlette explicitly but are clearly working with it (e.g., importing from starlette.*, using TestClient with httpx, or writing ASGI scope/ receive/send functions). Covers the 1.0 API exclusively — all deprecated 0.x patterns have been removed.