Results for “gatk”

Query the GTEx (Genotype-Tissue Expression) portal v2 REST API for tissue-specific gene expression (median TPM across 54 human tissues), expression QTLs (eQTLs), and splicing QTLs (sQTLs). Use when checking which tissues express a gene, finding which gene a non-coding/GWAS variant regulates via eQTLs, or interpreting variant regulatory effects across tissues. NOT for curated trait-variant associations (use alterlab-gwas), population allele frequencies or variant constraint (use alterlab-gnomad), or gene/transcript structure and ID mapping (use alterlab-ensembl). Part of the AlterLab Academic Skills suite.

Gateway REST API skill. Use when working with Gateway REST for tyk. Covers 18 endpoints.

Create animated GIFs optimized for Slack with validators for size constraints and composable animation primitives.

Interact with GitHub via the `gh` CLI. Use for issues (read, comment, file), pull requests (view, comment, check CI status), workflow runs, and `gh api` for queries the subcommands don't cover. Authentication is via the bot's GITHUB_TOKEN (already wired through `gh auth setup-git` at container start).