Results for “gene-expression”
7 skills
alterlab-ieu alterlab-gtex
Query the GTEx (Genotype-Tissue Expression) portal v2 REST API for tissue-specific gene expression (median TPM across 54 human tissues), expression QTLs (eQTLs), and splicing QTLs (sQTLs). Use when checking which tissues express a gene, finding which gene a non-coding/GWAS variant regulates via eQTLs, or interpreting variant regulatory effects across tissues. NOT for curated trait-variant associations (use alterlab-gwas), population allele frequencies or variant constraint (use alterlab-gnomad), or gene/transcript structure and ID mapping (use alterlab-ensembl). Part of the AlterLab Academic Skills suite.
60 · bundle
k-dense-ai scvi-tools
Provides deep generative models for single-cell omics analysis, including probabilistic batch correction, transfer learning, differential expression, and multi-modal integration.
30.2k · bundle
More results
alterlab-ieu alterlab-reactome
Query the Reactome REST API for pathway analysis, over-representation/enrichment, gene-to-pathway mapping, disease pathways, molecular interactions, and expression analysis. Use when running pathway enrichment on a gene list, mapping genes to curated biological pathways, or exploring disease pathways for systems biology studies. Part of the AlterLab Academic Skills suite.
60 · bundle
czlonkowski n8n-expression-syntax
Validate n8n expression syntax and fix common errors when writing {{}} expressions, accessing $json/$node variables, and mapping data between nodes.
5.7k · bundle
jackychenlu gget
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.
0 · bundle
claude-dev-suite cmake
CMake build system for C/C++ projects. Modern CMake (3.20+) with targets, properties, presets (CMakePresets.json), FetchContent, find_package, generator expressions, install rules, vcpkg/Conan integration. USE WHEN: user mentions "CMake", "CMakeLists.txt", "CMakePresets", "find_package", "FetchContent", "target_link_libraries", "vcpkg", "Conan", "C++ build" DO NOT USE FOR: Make, autotools, Bazel, Meson, Visual Studio .vcxproj direct editing
28
matlab roadrunner-build-scenario-from-osc
Build a RoadRunner Scenario programmatically from an OpenSCENARIO 1.x (.xosc) file using the `roadrunner-scenario-authoring` skill. Use when the user wants to recreate a scenario from a .xosc file, interpret an OpenSCENARIO file and build it programmatically, reconstruct a .xosc as a RoadRunner scenario, generate a MATLAB script from a .xosc file, or convert an OpenSCENARIO file to MATLAB code. Do NOT use when the user says "import" a .xosc file — that means they want RoadRunner's built-in importScenario API, not programmatic reconstruction. Handles position translation (LanePosition and RoadPosition to world coordinates), construct mapping, relative references, trajectory/route handling, parameter expressions, catalog references, and phase logic topology.
920 · bundle