Results for “kegg”

10 skills

Provide direct REST API access to KEGG (academic use only) for pathway analysis, gene-to-pathway and compound-to-pathway mapping, metabolic reactions, KEGG Orthology (KO), drug-drug interactions, and ID conversion. Use when querying KEGG pathways, mapping genes/compounds to metabolic maps, or running KEGG pathway enrichment via raw HTTP/REST; for protein-protein interaction networks prefer alterlab-string-db, for protein sequences and annotations prefer alterlab-uniprot, and for Python workflows spanning many databases prefer bioservices instead. Part of the AlterLab Academic Skills suite.

Query 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome) with a unified Python interface for cross-database analysis, identifier mapping, and sequence analysis.

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Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

Manages Keap CRM data through the Maton API gateway with OAuth, covering contacts, companies, tags, tasks, orders, opportunities, and campaigns.

alterlab-string-db

Query the STRING API for protein-protein interactions (59M proteins, 20B interactions across 5000+ species), building interaction networks, discovering functional partners, and running GO/KEGG/Pfam enrichment on protein lists. Use when constructing a protein-protein interaction network, expanding from seed proteins to functional partners, or running PPI-based enrichment for systems biology; for curated metabolic pathway maps and reactions prefer alterlab-kegg, and for protein sequences, annotations, or accession ID mapping prefer alterlab-uniprot instead. Part of the AlterLab Academic Skills suite.

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

Watch a Gmail inbox for new messages via the `gog` Google Workspace CLI — emits one turn per new message ID since the last poll. Cursor is a SET of message IDs (not a timestamp), so reordered or backdated deliveries don't double-emit. Opt-in: copy this directory into `<home>/skills/gmail-poller/`, install `gog`, run the OAuth setup once, set `GOG_ACCOUNT`, then `reload_pollers`. Companion to the `pollers` framework skill and the `world-scanning` skill (catalog of what's worth polling). For a sender-allowlist / label-filter, use a Gmail search query in `MIMIR_GMAIL_QUERY` — the Gmail search language IS the filter mechanism, this poller doesn't reimplement it.

metinduraktr-44

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

Use this skill for any request involving cryptocurrency market data, coin prices, trading volume, market cap, OHLC charts, historical data, exchanges, derivatives, NFTs, DeFi, on-chain token data, liquidity pools, DEX data, or anything powered by CoinGecko or GeckoTerminal APIs. Trigger this skill whenever the user asks about crypto prices, token data, market trends, or wants to call any CoinGecko or GeckoTerminal endpoint — even if they don't explicitly say "CoinGecko". Also trigger when the user asks about API keys, rate limits, or authentication for these APIs.