Plugins

1 plugin

Static Analysis

Static analysis toolkit with CodeQL, Semgrep, and SARIF parsing for security vulnerability detection

3 skills · plugin

Results for “parsing”

5 skills

parseur-automation

Automate Parseur document parsing operations through Composio's Parseur toolkit via Rube MCP.

Builds and modifies Knods visual AI workflows by parsing polling payloads, generating assistant text, and streaming responses with optional canvas action blocks.

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Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

flowstudio-power-automate-mcp

Connects an AI agent to a FlowStudio MCP server for Power Automate, handling authentication, tool discovery, and response parsing. Load this foundation skill before using specialized workflow skills for building, debugging, monitoring, or governing flows.

36.2k · bundle

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.