Results for “task-sequence”

6 skills

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.

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Distributed task queue system for Python enabling asynchronous execution of background jobs, scheduled tasks, and workflows across multiple workers with Django, Flask, and FastAPI integration.

moonladderstudios

Generate a one-story, TDD-first MoonSpec `tasks.md` from `spec.md`, `plan.md`, and design artifacts. Use when the user asks to run or reproduce `/moonspec.tasks`, create or update an executable task breakdown, map one MoonSpec story to implementation tasks, require unit and integration tests before code, preserve source-design traceability, or include final `/moonspec.verify` work.

Practical async patterns using TaskEither - clean pipelines instead of try/catch hell, with real API examples

Practical async patterns using TaskEither - clean pipelines instead of try/catch hell, with real API examples

Task Automation

Automate repetitive tasks and workflows using scripting, file watchers, scheduled jobs, CI triggers, and API polling to eliminate manual toil. Use when the user requests task automation or provides relevant inputs for this workflow.