Plugins
2 plugins@alirezarezvani
Engineering
37 advanced engineering skills: agent designer, agent workflow designer, RAG architect, database designer + schema designer + SQL assistant, migration architect, observability designer, dependency auditor, changelog generator (with semantic version bumper and hotfix/rollback procedures), API design reviewer, API test suite builder, CI/CD pipeline builder, MCP server builder, skill security auditor
33 skills · plugin
@trailofbits
Trailmark
Builds multi-language source code graphs for security analysis: call graphs, attack surface mapping, blast radius, taint propagation, complexity hotspots, and entry point enumeration. Generates Mermaid diagrams (call graphs, class hierarchies, dependency maps, heatmaps). Compares code graph snapshots for structural diff and evolution analysis. Runs graph-informed mutation testing triage (genotoxic
10 skills · plugin
Results for “gene-dependency”
5 skills
More results
alterlab-ieu alterlab-geniml
Machine learning on genomic interval data (BED files) with the geniml Python package — region embeddings (Region2Vec), joint region+metadata embeddings (BEDspace/StarSpace), single-cell ATAC-seq embeddings (scEmbed), consensus peak sets / universes (build-universe), tokenization, BEDshift randomization, and BBClient/BEDbase caching. Use when training or using region/cell embeddings, clustering scATAC-seq, building a tokenization universe from BED collections, or any ML/feature-learning task over genomic regions. NOT for plain interval arithmetic (overlap/intersect/merge counts) — that is gtars, not geniml. Part of the AlterLab Academic Skills suite.
60 · bundle
moonladderstudios batch-dependabot-resolver
Discover open Dependabot version-bump PRs and enqueue one `pr-resolver` workflow for each.
12 · bundle
k-dense-ai bulk-rnaseq
Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.
30.2k · bundle
hekivo superpowers-sage-plan-generator
Generate implementation plans from approved designs — plan-generator, phase-based plans, parallel batch execution, task dependency graph, owner skill routing, acceptance criteria, global done criteria, plan frontmatter, layout contract, interaction contract, anti-drift rules, plan format, AD-2 byte-for-byte gate, scope definition, execution plan, phases and batches, task anatomy, plan file format
13 · bundle