Results for “gnutls”

Machine learning on genomic interval data (BED files) with the geniml Python package — region embeddings (Region2Vec), joint region+metadata embeddings (BEDspace/StarSpace), single-cell ATAC-seq embeddings (scEmbed), consensus peak sets / universes (build-universe), tokenization, BEDshift randomization, and BBClient/BEDbase caching. Use when training or using region/cell embeddings, clustering scATAC-seq, building a tokenization universe from BED collections, or any ML/feature-learning task over genomic regions. NOT for plain interval arithmetic (overlap/intersect/merge counts) — that is gtars, not geniml. Part of the AlterLab Academic Skills suite.

Manage notes, bookmarks, and notebooks using the nb CLI. Create, list, search, and organize notes across multiple notebooks with Git-backed versioning.

Facilitates a read-only standup across git worktrees, branches, or PRs to compare changes and produce one consolidation plan.

Manage notes, bookmarks, and notebooks using the nb CLI. Create, list, search, and organize notes across multiple notebooks with Git-backed versioning.

Manage notes, bookmarks, and notebooks using the nb CLI. Create, list, search, and organize notes across multiple notebooks with Git-backed versioning.