Packs

2 packs

Analyze Single-Cell RNA-Seq

Analyze single-cell RNA-seq data using Scanpy, including quality control, normalization, clustering, marker gene identification, and visualization.

9 skills · pack

@brycewang-stanford

Twelve-skill bundle covering the Cell manuscript lifecycle: workflow router, scope/significance fit, single-narrative framing, the Highlights + eTOC + Graphical Abstract trio, the ≤150-word Summary, main-text writing, display items, STAR Methods + Key Resources Table, data/code availability, Cell Press author–date references, submission preflight + cover letter, and reviewer rebuttal.

9 skills · pack

Results for “single-cell”

2 skills

Manage biological datasets and models with LaminDB, an open-source lineage-native lakehouse. Covers setup, artifact registration, query/search, lineage tracking, validation, ontology-backed annotation, collections, branches, storage, and workflow integrations.

30.2k · bundle

More results

alterlab-geniml

Machine learning on genomic interval data (BED files) with the geniml Python package — region embeddings (Region2Vec), joint region+metadata embeddings (BEDspace/StarSpace), single-cell ATAC-seq embeddings (scEmbed), consensus peak sets / universes (build-universe), tokenization, BEDshift randomization, and BBClient/BEDbase caching. Use when training or using region/cell embeddings, clustering scATAC-seq, building a tokenization universe from BED collections, or any ML/feature-learning task over genomic regions. NOT for plain interval arithmetic (overlap/intersect/merge counts) — that is gtars, not geniml. Part of the AlterLab Academic Skills suite.