Results for “snakemake”

8 skills

Esta habilidade deve ser usada ao trabalhar com LaminDB, um framework de dados de código aberto para biologia que torna dados consultáveis, rastreáveis, reproduzíveis e FAIR. Use ao gerenciar datasets biológicos (scRNA-seq, espacial, citometria de fluxo, etc.), rastrear workflows computacionais, curar e validar dados com ontologias biológicas, construir data lakehouses, ou garantir linhagem de dados e reprodutibilidade em pesquisa biológica. Aborda gerenciamento de dados, anotação, ontologias (genes, tipos de célula, doenças, tecidos), validação de esquema, integrações com orquestradores de workflow (Nextflow, Snakemake) e plataformas MLOps (W&B, MLflow), e estratégias de deployment.

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Scaffolds new agent skills conforming to the Agent Skills specification and dotnet/skills repository conventions, generating SKILL.md files with proper frontmatter and directory structures.

Search existing local, marketplace, GitHub, and web skill sources before creating a new skill. Use when the user wants to create, build, fork, or find a skill for a workflow.

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Searches local, marketplace, GitHub, and web sources for existing skills before creating a new one, and vets external matches for safety.

Searches local, marketplace, GitHub, and web sources for existing skills before creating a new one to avoid duplication.

Scaffolds a new ClawBio skill from a JSON/YAML spec or interactively, generating SKILL.md, Python skeleton, tests, and updating the catalog.

Searches local, marketplace, GitHub, and web sources for existing skills before creating a new one, then ranks and vets candidates to avoid duplication.

Reconciles project documentation, agent memory, and rule files against the actual codebase after a development session, ensuring accuracy and consistency across all knowledge layers.