Results for “bioconda”

Analyze biological sequences, alignments, phylogenetic trees, and diversity metrics (alpha/beta, UniFrac) with ordination (PCoA) and PERMANOVA for microbiome and community ecology data.

Provides reference documentation and code patterns for Biopython, covering sequence handling, alignments, NCBI database access, BLAST, protein structures, phylogenetics, and other bioinformatics tasks.

Manipulate biological sequences, parse FASTA/GenBank/PDB files, access NCBI databases, run BLAST searches, and perform phylogenetics using the Biopython library.

Query 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome) with a unified Python interface for cross-database analysis, identifier mapping, and sequence analysis.

VS-Enhanced Literature Review Strategist - Comprehensive support for multiple review methodologies Full VS 5-Phase process: Prevents Mode Collapse and presents creative search strategies Supports: Systematic Review (PRISMA 2020), Scoping Review (JBI/PRISMA-ScR), Meta-Synthesis, Realist Synthesis, Narrative Review, Rapid Review Use when: conducting any type of literature review, systematic reviews, meta-analyses, scoping reviews, finding prior research Triggers: literature review, PRISMA, systematic review, scoping review, meta-synthesis, realist synthesis, narrative review, rapid review

Access the BRENDA enzyme database via its SOAP API to retrieve kinetic parameters (Km, kcat, Ki), reaction equations, organism data, and substrate-specific enzyme information indexed by EC number. Use when looking up enzyme kinetics, turnover numbers, or substrate specificity for biochemical research and metabolic pathway analysis. Part of the AlterLab Academic Skills suite.