Results for “genomics”
18 skills
k-dense-ai tiledbvcf
Store, query, and export genomic variant data (VCF/BCF) using TileDB's sparse array technology for scalable population genomics workflows.
30.2k
gabrielmoreira hla-typing
Performs HLA allele genotyping from WGS/WES VCF data, producing a structured markdown report and machine-readable JSON results.
17 · bundle
gabrielmoreira vcf-annotator
Annotates VCF variants using Ensembl VEP, ClinVar, and gnomAD, ranks them by predicted impact, and generates a reproducible report.
17 · bundle
gabrielmoreira gwas-lookup
Queries 9 genomic databases in parallel for a given rsID, returning unified GWAS, PheWAS, eQTL, and fine-mapping reports.
17 · bundle
lingxling gget
Queries 20+ bioinformatics databases from the command line or Python for gene info, sequences, BLAST/BLAT, protein structures, viral data, and expression metrics.
253 · bundle
k-dense-ai gget
Query 20+ bioinformatics databases from the command line or Python for gene information, sequences, protein structures, enrichment analysis, and more.
30.2k · bundle
More results
k-dense-ai onekgpd
Query the 1000 Genomes Project dataset at the individual participant level to find variants, carriers, and relatedness information.
30.2k · bundle
k-dense-ai pysam
Read, write, and manipulate genomic datasets including SAM/BAM/CRAM alignments, VCF/BCF variants, and FASTA/FASTQ sequences using a Pythonic interface to htslib.
30.2k · bundle
k-dense-ai geniml
Train unsupervised machine learning models on genomic interval data from BED files, including region embeddings, single-cell ATAC-seq analysis, and consensus peak building.
30.2k · bundle
k-dense-ai glycoengineering
Analyze and engineer protein glycosylation by scanning sequences for N-glycosylation sequons, predicting O-glycosylation hotspots, and accessing curated glycoengineering tools for therapeutic antibody optimization and vaccine design.
30.2k · bundle
k-dense-ai depmap
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores, drug sensitivity data, and gene effect profiles to identify cancer-specific vulnerabilities, synthetic lethal interactions, and validate oncology drug targets.
30.2k · bundle
qhjqhj00 depmap
Query the Cancer Dependency Map (DepMap) for CRISPR gene dependency scores, drug sensitivity data, and gene effect profiles to identify cancer-specific vulnerabilities, synthetic lethal interactions, and validate oncology drug targets.
3 · bundle
antigravity ii-commons
Retrieve deterministic search results, metadata, and full-document Markdown from arXiv, PubMed/PMC, and US policy corpora with daily freshness checks.
42.4k
k-dense-ai hugging-science
Discovers and uses scientific datasets, models, blog posts, and interactive demos from a curated catalog for AI/ML work in domains like biology, chemistry, physics, and genomics.
30.2k · bundle
k-dense-ai phylogenetics
Build and analyze phylogenetic trees using MAFFT, IQ-TREE 2, and FastTree, with visualization via ETE3 or FigTree for evolutionary analysis, microbial genomics, viral phylodynamics, and molecular clock studies.
30.2k · bundle
gabrielmoreira gi-expression
Predicts tissue or cell-type gene expression (log TPM and TPM) from a TSS-centered DNA sequence using the hosted Genomic Intelligence G0 Expression model, conditioned on a free-text cell-type description.
17 · bundle
lingxling depmap
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.
253 · bundle
alterlab-ieu alterlab-ensembl
Query the Ensembl genome database REST API across 250+ species for gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, and Variant Effect Predictor (VEP) annotations. Use when mapping gene IDs or coordinates, fetching genomic sequence, finding orthologs across species, or predicting variant consequences for genomic research. Part of the AlterLab Academic Skills suite.
60 · bundle