Results for “molecular-docking”

10 skills
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k-dense-ai
diffdock
Predict 3D binding poses of small molecule ligands to protein targets using diffusion-based molecular docking, supporting single complexes, batch processing, and virtual screening.
30.2k · bundle
neuralblitz
biophysics
Applies physical principles to model biological systems, including protein folding, membrane transport, molecular forces, and neural signaling.
1
k-dense-ai
hugging-science
Discovers and uses scientific datasets, models, blog posts, and interactive demos from a curated catalog for AI/ML work in domains like biology, chemistry, physics, and genomics.
30.2k · bundle
k-dense-ai
molecular-dynamics
Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces).
30.2k · bundle
k-dense-ai
tamarind
Run computational biology tools for protein structure prediction, design, docking, and molecular dynamics on managed cloud GPUs via REST API or MCP server.
30.2k · bundle
k-dense-ai
pytdc
Access AI-ready drug discovery datasets and benchmarks from Therapeutics Data Commons, covering ADME, toxicity, drug-target interactions, and molecular generation with standardized splits and evaluation metrics.
30.2k · bundle
k-dense-ai
datamol
Simplify molecular cheminformatics with a Pythonic wrapper around RDKit for SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, and parallel processing.
30.2k · bundle
k-dense-ai
torchdrug
Build and train graph neural networks for drug discovery, protein modeling, and molecular science using PyTorch-native tools.
30.2k · bundle
alirezarezvani
dossier
Produces a decision-grade dossier on a specific company, person, nonprofit, or government org by testing the user's hypothesis rather than confirming it. Outputs an editable Word document with verdict, identity facts, 12-month activity timeline, network and reputation signals, and red flags.
20.4k · bundle