Results for “pm2”

Use when resolving structured citation fields or citation XML into candidate PubMed IDs with EDirect matching modes.

Process and analyze mass spectrometry data: import spectra from MGF, mzML, MSP, and JSON formats; apply 40+ filters for metadata harmonization and peak cleaning; compute spectral similarities (cosine, modified cosine) for compound identification; build reproducible processing pipelines.

Analyze proteomics and metabolomics mass spectrometry data with PyOpenMS: read/write MS file formats, process spectra, detect and quantify features, identify peptides and proteins, and run end-to-end LC-MS/MS pipelines using ready-to-run scripts.

Use when converting `PubmedArticle` XML from EDirect into APA-style citation text or APA-structured XML for downstream parsing.

Formalizes narrative technical documents into structured mathematical problem specifications with variables, constraints, objectives, and uncertainty, citing evidence and flagging missing information.

Run STORM phase 2 — outline generation. This skill should be used when the user asks to "generate an outline for a storm article", "draft a wikipedia-style outline", or invokes /storm:outline. Produces a draft outline from parametric knowledge then refines it using the research information table.