Results for “process”

Simplify molecular cheminformatics with a Pythonic wrapper around RDKit for SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, and parallel processing.

Automates hypothesis generation and testing on tabular datasets using LLMs, combining data-driven discovery with literature integration for scientific research.

Simulates a complete international journal peer review process with 5 dynamically configured reviewers, producing structured editorial decisions and revision roadmaps.

Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.

Run a structured 5-day process to prototype, test, and validate product ideas with real users. Covers mapping, sketching, deciding, prototyping, and testing across Monday-Friday.

Guide product managers through a complete discovery cycle from problem hypothesis to validated solution using problem framing, customer interviews, synthesis, and experimentation.

Predict 3D binding poses of small molecule ligands to protein targets using diffusion-based molecular docking, supporting single complexes, batch processing, and virtual screening.

Process and analyze high-throughput sequencing data with deepTools for quality control, normalization, comparison, and publication-quality visualizations of ChIP-seq, RNA-seq, and ATAC-seq experiments.

Use when the user asks to run Gemini CLI for code review, plan review, or big context (>200k) processing. Ideal for comprehensive analysis requiring large context windows. Uses Gemini 3 Pro by default for state-of-the-art reasoning and coding.

Detect and analyze heap spray attacks in memory dumps using Volatility3 plugins to identify NOP sled patterns, shellcode landing zones, and suspicious large allocations in process virtual address space.

VS-Enhanced Research Question Refiner - Prevents Mode Collapse and derives differentiated research questions Enhanced VS 3-Phase process: Modal question avoidance, alternatives presentation, differentiated RQ recommendation Use when: refining research ideas, formulating research questions, clarifying scope Triggers: research question, 연구 질문, PICO, SPIDER, research idea

Use quando o usuário solicitar a ativação do Gemini CLI para revisão de código, revisão de plano ou processamento de contexto amplo (>200k). Ideal para análise abrangente exigindo janelas de contexto grandes. Usa Gemini 3 Pro por padrão para raciocínio e codificação de última geração.

Builds reusable specialized skills for creating research-paper figures from lawful source material, then uses those skills to design and render figures for target papers.

Erstellt Entwürfe für energierechtliche Verfahren vor Behörden und Gerichten, inklusive Fristen- und Risikoanalyse mit Sofortmaßnahmen.

Structure the first 90 days of a VP or CPO transition as a diagnostic process, not an execution sprint, using a three-phase playbook to build evidence before making decisions.

Plan, run, and measure adversary engagement operations using the MITRE Engage framework, covering the Engage Matrix, 10-Step Operational Process, and mapping Activities to ATT&CK techniques.

Research Guardian - Ethics Advisory & Bias Detection across all research stages Enhanced VS 3-Phase process: Surface-level screening, deep contextual analysis, constructive recommendations Use when: reviewing research ethics, checking for bias, assessing trustworthiness, QRP screening Triggers: ethics review, IRB, bias detection, QRP, trustworthiness, research integrity, p-hacking, HARKing

VS-Enhanced Evidence Quality Appraiser - Prevents Mode Collapse with context-adaptive quality assessment Enhanced VS 3-Phase process: Avoids automatic tool application, delivers research-specific evaluation strategies Use when: appraising study quality, assessing risk of bias, grading evidence Triggers: quality appraisal, RoB, GRADE, Newcastle-Ottawa, risk of bias, methodological quality

Analyze proteomics and metabolomics mass spectrometry data with PyOpenMS: read/write MS file formats, process spectra, detect and quantify features, identify peptides and proteins, and run end-to-end LC-MS/MS pipelines using ready-to-run scripts.

Compiles any research input — PDF papers, GitHub repositories, experiment logs, code directories, or raw notes — into a complete Agent-Native Research Artifact (ARA) with cognitive layer (claims, concepts, heuristics), physical layer (configs, code stubs), exploration graph, and grounded evidence. Use when ingesting a.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

Conducts Privacy Impact Assessment for health data processing under GDPR Article 9, HIPAA, and sector-specific health privacy regulations. Covers special category data safeguards, clinical research data, patient portals, health wearables, genetic data, and cross-border health data transfers. Keywords: health data PIA, DPIA, Article 9, HIPAA, special category data, clinical research, patient privacy, genetic data.

Guides DPIA for health and medical data processing covering Art. 9(2)(h)-(j) exemptions, HIPAA crosswalk for transatlantic operations, clinical trial data protection under EU CTR 536/2014, and genetic data specifics under Art. 9(1). Activate for healthcare systems, clinical research, health apps, or medical device data. Keywords: health data, DPIA, Art. 9, clinical trial, genetic data, HIPAA, medical records, special category.

VS-Enhanced Quantitative Design Consultant with Materials & Sampling Enhanced VS 3-Phase process: Avoids obvious experimental designs, proposes context-optimal quantitative strategies Absorbed C4 (Experimental Materials Developer) and D1 (Sampling Strategy Advisor) capabilities Use when: selecting quantitative research design, planning experimental/survey methodology, power analysis, developing materials, sampling Triggers: RCT, quasi-experimental, experimental design, survey design, power analysis, sample size, factorial design, materials, stimuli, sampling strategy

VS-Enhanced Qualitative Design Consultant with Ethnography & Action Research Enhanced VS 3-Phase process: Avoids overused phenomenology, proposes context-optimal qualitative strategies Absorbed H1 (Ethnographic Research Advisor) and H2 (Action Research Facilitator) capabilities Use when: selecting qualitative research design, planning phenomenology/grounded theory/case study/ethnography/action research Triggers: phenomenology, 현상학, grounded theory, 근거이론, case study, 사례연구, narrative inquiry, ethnography, 민족지, action research, 실행연구, qualitative design

Especialista em CrewAI - o principal framework multi-agente baseado em papéis utilizado por 60% das empresas da Fortune 500. Abrange design de agentes com papéis e objetivos, definição de tarefas, orquestração de crew, tipos de processo (sequencial, hierárquico, paralelo), sistemas de memória e flows para workflows complexos. Essencial para construir equipes colaborativas de agentes IA. Use quando: crewai, equipe multi-agente, papéis de agentes, crew de agentes, agentes baseados em papéis.

Provide direct REST API access to PubMed via the NCBI E-utilities API, supporting advanced Boolean/MeSH queries, batch processing, and citation management. Use when searching biomedical literature by MeSH terms, retrieving abstracts or PMIDs in bulk, or scripting custom PubMed queries over raw HTTP/REST — for Python workflows prefer biopython (Bio.Entrez) instead, use this for direct REST work or custom API implementations. Part of the AlterLab Academic Skills suite.

This skill should be used when the user asks to "find skills in the wild", "assimilate popular workflows", "discover SKILL.md files in repos", "research external skills", "find workflow patterns", "survey the skill landscape", "what skills exist out there", or wants to investigate public repositories for extractable processes, babysitter plugins, and reusable procedural insights. Searches GitHub for SKILL.md files, classifies repos by archetype, and maintains structured research under docs/reference-repos/.

VS-Enhanced Literature Review Strategist - Comprehensive support for multiple review methodologies Full VS 5-Phase process: Prevents Mode Collapse and presents creative search strategies Supports: Systematic Review (PRISMA 2020), Scoping Review (JBI/PRISMA-ScR), Meta-Synthesis, Realist Synthesis, Narrative Review, Rapid Review Use when: conducting any type of literature review, systematic reviews, meta-analyses, scoping reviews, finding prior research Triggers: literature review, PRISMA, systematic review, scoping review, meta-synthesis, realist synthesis, narrative review, rapid review