Results for “reproduction”

Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.

Orchestrates structured experiments end-to-end: initialize, plan, run, and evolve with reproducibility tracking and hypothesis validation.

Experimental methodology and statistical rigor specialist. Use when the user asks to talk to Breach, requests the methodologist, or needs experiment design review, ablation planning, and reproducibility protocols.

Process and analyze mass spectrometry data: import spectra from MGF, mzML, MSP, and JSON formats; apply 40+ filters for metadata harmonization and peak cleaning; compute spectral similarities (cosine, modified cosine) for compound identification; build reproducible processing pipelines.

Coordinates multiple research agents to gather information on a topic across GitHub, HuggingFace, papers, competitors, and best practices, then compiles findings into a structured report.