Results for “heartlib”

Perform high-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames, including overlap, nearest, merge, coverage, complement, subtract, and reading/writing BED, VCF, BAM, GFF, FASTA, and FASTQ formats with streaming and cloud-native support.

Bulk-load text files into MariaDB tables using the mariadb-import client, covering table-name-from-filename rules, TAB defaults, --local vs server-side reads, duplicate handling, and parallel loads.

Syncs key-value preferences and state across multiple agents using a shared TiDB Zero database, with optional auto-provisioning of a free ephemeral database.

Perform fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O, DataFusion SQL, and pileup on Polars DataFrames via the polars-bio library, serving as a scalable alternative to bioframe and bedtools.

Covers MariaDB-specific behavior of the mariadb command-line client, including batch mode output, delimiter handling, safe-updates, charset detection, and TLS defaults, for writing or reviewing shell commands and scripts.

Manage biological datasets and models with LaminDB, an open-source lineage-native lakehouse. Covers setup, artifact registration, query/search, lineage tracking, validation, ontology-backed annotation, collections, branches, storage, and workflow integrations.