Results for “data-structure”

SEO, AEO (Answer Engine Optimization), and GEO strategy for search engines and AI visibility. Use when working on "SEO audit," "technical SEO," "on-page SEO," "AI search optimization," "AEO," "GEO," "AI visibility," "optimize for ChatGPT," "optimize for Perplexity," "AI Overviews," "answer engine optimization," "generative engine optimization," "AI citations," "featured snippets," "meta tags," "schema markup," "search ranking," "content optimization," "E-E-A-T," "structured data," "search console," "SEO health check," "why am I not ranking," "AI search readiness," "backlink strategy," "link building," "domain authority," "programmatic SEO," "SEO at scale," "template-based SEO," "AEO monitoring," "AI search monitoring," "JSON-LD," "rich snippets," "schema.org," "SERP analysis," "search intent," "site architecture," "information architecture," "URL structure," "internal linking," or "navigation." For keyword research, see keyword-research-and-clustering.

Query ChEMBL via the chembl_webresource_client Python client for curated bioactive molecules and drug-like compound libraries at scale — search compounds by structure or physicochemical properties, retrieve bioactivity measurements (IC50, Ki, EC50), and find inhibitors of a target. Use when screening chemical libraries, mining curated bioactivity for a protein, running SAR studies, or sourcing medicinal-chemistry data; for measured protein-ligand binding affinities (Ki/Kd/IC50) prefer alterlab-bindingdb instead. Part of the AlterLab Academic Skills suite.

Query the EMBL-EBI InterPro REST API for protein family, domain, and functional-site annotations integrated from member databases (Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, CDD, ProSite, NCBIfam, and others). Use when predicting protein function, analyzing or comparing domain architecture, classifying a protein by family or homologous superfamily, resolving a Pfam/InterPro accession, or mapping a protein's signatures to GO terms. Not for raw UniProt entry/FASTA retrieval or AlphaFold 3D structures. Part of the AlterLab Academic Skills suite.

Debug LLM applications using the Phoenix CLI. Fetch traces, analyze errors, structure trace review with open coding and axial coding, inspect datasets, review experiments, query annotation configs, and use the GraphQL API. Use whenever the user is analyzing traces or spans, investigating LLM/agent failures, deciding what to do after instrumenting an app, building failure taxonomies, choosing what evals to write, or asking "what's going wrong", "what kinds of mistakes", or "where do I focus" — even without naming a technique.

Structure software around the Dependency Rule: source code dependencies point inward from frameworks to use cases to entities. Use when the user mentions "architecture layers", "dependency rule", "ports and adapters", "hexagonal architecture", "use case boundary", "onion architecture", "screaming architecture", or "framework independence". Also trigger when decoupling business logic from databases or frameworks, defining module boundaries, or debating where to put business rules. Covers component principles, boundaries, and SOLID. For code quality, see clean-code. For domain modeling, see domain-driven-design.

Implement the Entrepreneurial Operating System (EOS) to align vision and execution across a company. Use when the user mentions "EOS", "V/TO", "quarterly rocks", "Level 10 meetings", "accountability chart", "IDS process", "Entrepreneurial Operating System", or "business operating system". Also trigger when a growing company needs meeting structure, goal-setting frameworks, or a systematic approach to solving recurring organizational issues. Covers the six EOS components: Vision, People, Data, Issues, Process, Traction. For team motivation design, see drive-motivation. For lean experimentation, see lean-startup.

Structured threat modeling skill using the PASTA framework (Process for Attack Simulation and Threat Analysis) combined with Adam Shostack's 4-question framework. Use this skill whenever the user asks to do threat modeling, security analysis, map the attack surface, identify threats, or review an application for security risks — even if they don't mention PASTA or a specific framework by name. Core activities: Component Mapping (architecture + data flows), Critical Assessment (business impact prioritization), and Logic Flaw Identification (attacker mindset on business logic). Produces: component map diagram (Mermaid), data flow diagram (Mermaid), attack tree (Mermaid), STRIDE threat table, prioritized risk register, and an actionable mitigation plan. Invoke proactively for any security review, architecture review, or "what could go wrong?" session.

Create professional, dark-themed SVG diagrams of any type — architecture diagrams, flowcharts, sequence diagrams, structural diagrams, mind maps, timelines, illustrative/conceptual diagrams, and more. Use this skill whenever the user asks for any kind of technical or conceptual diagram, visualization of a system, process flow, data flow, component relationship, network topology, decision tree, org chart, state machine, or any visual representation of structure/logic/process. Also trigger when the user says "画个图" "画一个架构图" "diagram" "flowchart" "sequence diagram" "draw me a ..." or uploads content and asks to visualize it. Output is always a standalone .svg file.

Scrapes pump.fun/board using Chrome browser automation to extract the top 100 trending Solana tokens and writes structured markdown for a trading agent to consume. Use this skill any time you need to: scan pump.fun for new tokens, refresh the pump.md token list, run the scheduled board scrape, collect Solana meme token data, or build/update a trading watchlist from pump.fun. Even if the user says something casual like "check pump" or "update the token list" or "what's trending on pump", use this skill. The output file path and format are configurable but default to /Users/8bit/solanaos/pump.md.

When the user wants to optimize content for AI search engines, get cited by LLMs, or appear in AI-generated answers. Also use when the user mentions 'AI SEO,' 'AEO,' 'GEO,' 'LLMO,' 'answer engine optimization,' 'generative engine optimization,' 'LLM optimization,' 'AI Overviews,' 'optimize for ChatGPT,' 'optimize for Perplexity,' 'AI citations,' 'AI visibility,' 'zero-click search,' 'how do I show up in AI answers,' 'LLM mentions,' or 'optimize for Claude/Gemini.' Use this whenever someone wants their content to be cited or surfaced by AI assistants and AI search engines. For traditional technical and on-page SEO audits, see seo-audit. For structured data implementation, see schema-markup.

Apply the scGPT single-cell foundation model (Cui 2024) to annotate and embed cells — zero-shot and fine-tuned cell-type annotation, gene/cell embeddings, batch integration, and gene-regulatory / perturbation inference from AnnData. Use when annotating cell types with a pretrained foundation model, generating scGPT embeddings, integrating batches with a transformer, or running zero-shot single-cell inference on an h5ad. For probabilistic latent models (scVI/scANVI) prefer alterlab-scvi-tools; for the standard QC→cluster→UMAP→DE pipeline prefer alterlab-scanpy; for the AnnData data structure itself prefer alterlab-anndata; for protein language models prefer alterlab-esm. Part of the AlterLab Academic Skills suite.

Performs deep architectural analysis of a specified module, directory, or feature area by examining structural coupling, data flow, concurrency patterns, risk, and SOLID alignment. Use when the user wants to assess, evaluate, or review the architecture, design quality, dependency structure, coupling, cohesion, or technical debt of an existing part of the codebase. Not for investigating specific bugs, runtime errors, or failures — use investigate. Not for test planning — use automated-test-planning. Not for file-level code review — use code-review. Not for researching open-ended options, prior art, or how something works — use research. Not for designing a new interface or contract — use design-an-api. Not for writing documentation or architectural decision records.

When the user wants to audit, review, or diagnose SEO issues on their site. Also use when the user mentions "SEO audit," "technical SEO," "why am I not ranking," "SEO issues," "on-page SEO," "meta tags review," "SEO health check," "my traffic dropped," "lost rankings," "not showing up in Google," "site isn't ranking," "Google update hit me," "page speed," "core web vitals," "crawl errors," or "indexing issues." Use this even if the user just says something vague like "my SEO is bad" or "help with SEO" — start with an audit. For building pages at scale to target keywords, see programmatic-seo. For adding structured data, see schema. For AI search optimization, see ai-seo.

When the user wants to optimize content for AI search engines, get cited by LLMs, or appear in AI-generated answers. Also use when the user mentions 'AI SEO,' 'AEO,' 'GEO,' 'LLMO,' 'answer engine optimization,' 'generative engine optimization,' 'LLM optimization,' 'AI Overviews,' 'optimize for ChatGPT,' 'optimize for Perplexity,' 'AI citations,' 'AI visibility,' 'zero-click search,' 'how do I show up in AI answers,' 'LLM mentions,' 'optimize for Claude/Gemini,' 'llms.txt,' 'OKF,' 'Open Knowledge Format,' 'knowledge bundle,' or 'agent-readable site.' Use this whenever someone wants their content to be cited or surfaced by AI assistants and AI search engines. For traditional technical and on-page SEO audits, see seo-audit. For structured data implementation, see schema.

Build, audit, debug, and migrate websites for durable organic discovery and reliable use by search engines, LLMs, and browser agents. Use for SEO audits or implementation; new sites, routes, templates, CMSs, catalogs, or content programs; crawling, rendering, indexing, robots, canonicals, redirects, sitemaps, hreflang, structured data, metadata, links, faceted navigation, JavaScript SEO, Core Web Vitals, or migrations; keyword, intent, architecture, content, local, media, or authority work; traffic, ranking, CTR, or indexation losses; AEO, GEO, AI Overviews, AI Mode, ChatGPT search, crawler controls, agent-readable pages, Markdown representations, `Accept: text/markdown` content negotiation, `llms.txt`, WebMCP, or agent interaction design. Trigger whenever code or architecture can materially affect public discoverability or machine usability, even if the user does not say SEO. Do not use for paid-search management alone.

Use BEFORE generating, refactoring, reviewing, or debugging code. Trigger phrases include "write a function/script/class for X", "review this code/diff/PR", "refactor this", "debug this error", "is this implementation correct", "what's wrong with this code", "improve this code", "translate from X to Y", or any prompt with a code block the user wants you to act on. Also fires when planning architectural changes, picking algorithms or data structures, or evaluating dependency upgrades. Calls the code MCP tool to retrieve an engineering scaffold (failure pattern, procedure, correct-pattern example, verification step) before generating. Catches hallucinated APIs, lost edge cases, premature algorithm commitment, silent contract violations, refactors that change behavior masked by passing tests. Do NOT trigger for pure code reading with no action requested, simple syntax questions, file...