Results for “data-retrieval”

Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.

Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.

Query the Ensembl genome database REST API across 250+ species for gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, and Variant Effect Predictor (VEP) annotations. Use when mapping gene IDs or coordinates, fetching genomic sequence, finding orthologs across species, or predicting variant consequences for genomic research. Part of the AlterLab Academic Skills suite.

Provide direct REST API access to UniProt (Swiss-Prot/TrEMBL) for protein sequence searches, FASTA retrieval, functional annotations (GO terms, domains), and cross-database ID mapping. Use when looking up a protein entry, fetching a protein FASTA sequence, or mapping accessions between databases over raw HTTP/REST; for EXPERIMENTAL 3D structures prefer alterlab-pdb, for AI-PREDICTED 3D structures prefer alterlab-alphafold-db, for protein-protein interaction networks prefer alterlab-string-db, and for Python workflows spanning many databases prefer bioservices instead. Part of the AlterLab Academic Skills suite.

Codebase-wide Retrieval-Augmented Generation for deep code understanding. Use when: (1) Answering questions about large codebases by searching across all files, (2) Finding related code patterns, implementations, or dependencies across a project, (3) Building context from multiple files before making changes, (4) Understanding how a feature works end-to-end across the codebase, (5) Tracing data flow through multiple modules

Use to discover specific skills for the Sales plugin, when it is at-mentioned directly, or for any mentions of potentially relevant work, including: meeting prep or call follow-up; account research, monitoring, or prioritization; internal source finding; competitive briefs; deal strategy; pipeline or forecast review; company or contact enrichment; customer quote retrieval; rep coaching; business cases; sales company research; and CRM or data enrichment workflows.

Security controls for RAG. Indirect prompt-injection via retrieved documents, PII detection/redaction (Microsoft Presidio, AWS Comprehend), multi-tenant isolation, ACL-aware retrieval with row-level/metadata filtering, data-leakage prevention, jailbreak hardening on retrieved context, GDPR right-to-be-forgotten in vector DBs. USE WHEN: user mentions "prompt injection RAG", "indirect prompt injection", "PII redaction", "Presidio", "ACL RAG", "row-level security", "multi-tenant RAG isolation", "GDPR vector DB", "right to be forgotten", "jailbreak", "data leakage RAG" DO NOT USE FOR: hallucination detection - use `rag-guardrails`; tenancy scaling patterns - use `rag-production`; audit tracing schema - use `rag-observability`

Query the EMBL-EBI InterPro REST API for protein family, domain, and functional-site annotations integrated from member databases (Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, CDD, ProSite, NCBIfam, and others). Use when predicting protein function, analyzing or comparing domain architecture, classifying a protein by family or homologous superfamily, resolving a Pfam/InterPro accession, or mapping a protein's signatures to GO terms. Not for raw UniProt entry/FASTA retrieval or AlphaFold 3D structures. Part of the AlterLab Academic Skills suite.