All Skills

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.

Foundational plotting library. Create line plots, scatter, bar, histograms, heatmaps, 3D, subplots, export PNG/PDF/SVG, for scientific visualization and publication figures.

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.

A skill that creates new Claude skills and automatically shares them on Slack using Rube for seamless team collaboration and skill discovery.

Downloads videos from YouTube and other platforms for offline viewing, editing, or archival. Handles various formats and quality options.

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).

This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.

Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.

Create a concise plan. Use when a user explicitly asks for a plan related to a coding task.

Configure and manage - Parse pdf parser operations. Auto-activating skill for Business Automation. Triggers on: pdf parser, pdf parser Part of the Business Automation skill category. Use when working with pdf parser functionality. Trigger with phrases like "pdf parser", "pdf parser", "pdf".

Generate faq generator operations. Auto-activating skill for Technical Documentation. Triggers on: faq generator, faq generator Part of the Technical Documentation skill category. Use when working with faq generator functionality. Trigger with phrases like "faq generator", "faq generator", "faq".

Create runbook creator operations. Auto-activating skill for Technical Documentation. Triggers on: runbook creator, runbook creator Part of the Technical Documentation skill category. Use when working with runbook creator functionality. Trigger with phrases like "runbook creator", "runbook creator", "runbook".

Generate pdf generator operations. Auto-activating skill for Business Automation. Triggers on: pdf generator, pdf generator Part of the Business Automation skill category. Use when working with pdf generator functionality. Trigger with phrases like "pdf generator", "pdf generator", "pdf".

Manage etag handler operations. Auto-activating skill for API Development. Triggers on: etag handler, etag handler Part of the API Development skill category. Use when working with etag handler functionality. Trigger with phrases like "etag handler", "etag handler", "etag".

Create stub creator operations. Auto-activating skill for Test Automation. Triggers on: stub creator, stub creator Part of the Test Automation skill category. Use when working with stub creator functionality. Trigger with phrases like "stub creator", "stub creator", "stub".

Provides step-by-step guidance and generates configurations for creating surveys, following industry best practices and validation standards.

Create org chart creator operations. Auto-activating skill for Visual Content. Triggers on: org chart creator, org chart creator Part of the Visual Content skill category. Use when working with org chart creator functionality. Trigger with phrases like "org chart creator", "org creator", "org".

Manage document merger operations. Auto-activating skill for Business Automation. Triggers on: document merger, document merger Part of the Business Automation skill category. Use when working with document merger functionality. Trigger with phrases like "document merger", "document merger", "document".

Create waf rule creator operations. Auto-activating skill for Security Advanced. Triggers on: waf rule creator, waf rule creator Part of the Security Advanced skill category. Use when working with waf rule creator functionality. Trigger with phrases like "waf rule creator", "waf creator", "waf".

Generate svg icon generator operations. Auto-activating skill for Visual Content. Triggers on: svg icon generator, svg icon generator Part of the Visual Content skill category. Use when working with svg icon generator functionality. Trigger with phrases like "svg icon generator", "svg generator", "svg".

Configure and manage - Parse email parser operations. Auto-activating skill for Business Automation. Triggers on: email parser, email parser Part of the Business Automation skill category. Use when working with email parser functionality. Trigger with phrases like "email parser", "email parser", "email".

Manage dotenv manager operations. Auto-activating skill for DevOps Basics. Triggers on: dotenv manager, dotenv manager Part of the DevOps Basics skill category. Use when working with dotenv manager functionality. Trigger with phrases like "dotenv manager", "dotenv manager", "dotenv".

Manage gitlab ci basics operations. Auto-activating skill for DevOps Basics. Triggers on: gitlab ci basics, gitlab ci basics Part of the DevOps Basics skill category. Use when working with gitlab ci basics functionality. Trigger with phrases like "gitlab ci basics", "gitlab basics", "gitlab".

Validate pci dss validator operations. Auto-activating skill for Security Advanced. Triggers on: pci dss validator, pci dss validator Part of the Security Advanced skill category. Use when working with pci dss validator functionality. Trigger with phrases like "pci dss validator", "pci validator", "pci".

Configure sns topic config operations. Auto-activating skill for AWS Skills. Triggers on: sns topic config, sns topic config Part of the AWS Skills skill category. Use when configuring systems or services. Trigger with phrases like "sns topic config", "sns config", "sns".

Build Doc Template - Auto-activating skill for Technical Documentation. Triggers on: design doc template, design doc template Part of the Technical Documentation skill category. Use when working with design doc template functionality. Trigger with phrases like "design doc template", "design template", "design".

Manage user journey mapper operations. Auto-activating skill for Visual Content. Triggers on: user journey mapper, user journey mapper Part of the Visual Content skill category. Use when working with user journey mapper functionality. Trigger with phrases like "user journey mapper", "user mapper", "user".

Execute self-learning system that captures corrections during sessions and syncs them to CLAUDE.md. Use when discussing learnings, corrections, or when the user mentions remembering something. Trigger with phrases like "remember this", "don't forget", "use X not Y", or "actually...".

Manage ssh key manager operations. Auto-activating skill for DevOps Basics. Triggers on: ssh key manager, ssh key manager Part of the DevOps Basics skill category. Use when working with ssh key manager functionality. Trigger with phrases like "ssh key manager", "ssh manager", "ssh".

Manage timeout handler operations. Auto-activating skill for API Integration. Triggers on: timeout handler, timeout handler Part of the API Integration skill category. Use when working with timeout handler functionality. Trigger with phrases like "timeout handler", "timeout handler", "timeout".

Generate invoice generator operations. Auto-activating skill for Business Automation. Triggers on: invoice generator, invoice generator Part of the Business Automation skill category. Use when working with invoice generator functionality. Trigger with phrases like "invoice generator", "invoice generator", "invoice".

Create iam policy creator operations. Auto-activating skill for AWS Skills. Triggers on: iam policy creator, iam policy creator Part of the AWS Skills skill category. Use when working with iam policy creator functionality. Trigger with phrases like "iam policy creator", "iam creator", "iam".

Generate iam role generator operations. Auto-activating skill for AWS Skills. Triggers on: iam role generator, iam role generator Part of the AWS Skills skill category. Use when working with iam role generator functionality. Trigger with phrases like "iam role generator", "iam generator", "iam".

Configure oauth client setup operations. Auto-activating skill for API Integration. Triggers on: oauth client setup, oauth client setup Part of the API Integration skill category. Use when working with oauth client setup functionality. Trigger with phrases like "oauth client setup", "oauth setup", "oauth".