Results for “workflow-pipelines”

Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.

Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for computational pathology deep learning pipelines. Applies to WSI formats (SVS, TIFF, NDPI), tile-based analysis, and histological image preprocessing workflows.

Process audio files with SoX (Sound eXchange). Use when a user asks to apply audio effects, mix and combine audio tracks, convert audio formats, batch process audio files, normalize volume, trim silence, add reverb or echo, change tempo or pitch, split audio files, create spectrograms, generate test tones, resample audio, or build audio processing pipelines. Covers all SoX effects, format conversion, mixing, and batch workflows.

Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2). Use when tasks involve quantum chemistry calculations, molecular property prediction, DFT or semiempirical methods, neural network potentials (AIMNet2), protein-ligand binding predictions, or automated computational chemistry pipelines. Provides cloud compute resources with no local setup required.

Expert 3D modeling specialist with deep knowledge of topology, UV mapping, game-ready and film-ready pipelines, DCC tool workflows (Blender, Maya, ZBrush, 3ds Max, Houdini), retopology, LOD systems, and export pipelines. This skill represents years of production experience distilled into actionable guidance. Use when "3d model, 3d modeling, mesh topology, uv unwrap, uv mapping, retopology, retopo, low poly, high poly, subdivision, subdiv, edge flow, edge loops, polygon modeling, box modeling, hard surface, organic modeling, sculpting, zbrush, blender modeling, maya modeling, 3ds max, LOD, level of detail, game ready mesh, film ready, baking normals, high to low, fbx export, gltf export, texel density, 3d, modeling, topology, uv, game-dev, vfx, blender, maya, zbrush, retopology, lod, hard-surface, organic, sculpting" mentioned.

Universal Reasoning Framework implementing λο.τ calculus over holarchic structures. Provides severity-based routing (R0-R3 pipelines), modular cognitive architecture (DEC, EVL, PAT, SYN, MEA, HYP, INT), fractal execution patterns, multi-level validation (η≥4, KROG), and adaptive learning. Triggers on: (1) complex multi-step reasoning, (2) high-stakes decisions requiring validation, (3) research synthesis across domains, (4) system design and architecture, (5) crisis management, (6) performance optimization. Implements scale-invariant reasoning from micro (tool calls) through meso (skill composition) to macro (orchestrated workflows).

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

Coordinate agents via the AMQ CLI for file-based inter-agent messaging. Use this skill whenever you need to send messages to another agent (codex, claude, or any named handle), check your inbox, drain queued messages, set up co-op mode between agents, join a swarm team, route messages across projects, or diagnose delivery issues. Also use it when you receive a message and need to know how to reply, inspect receipts, or handle priority. Covers any multi-agent coordination task where agents need to talk to each other — review requests, questions, status updates, decision threads, wake notifications, and orchestrator integration (Symphony, Kanban). For collaborative spec/design workflows specifically, prefer the /amq-spec skill which provides structured phase-by-phase guidance. Not intended for distributed systems design (RabbitMQ, Kafka), CI/CD pipelines, or single-agent tasks with no partner.