Results for “indexing”

Runs high-performance genomic interval analysis with gtars (databio), a Rust toolkit with Python bindings — the performance-critical backend for the geniml ML library. Use when computing overlaps/jaccard/coverage between BED region sets, indexing intervals with IGD, generating uniwig accumulation/coverage tracks, tokenizing genomic regions for ML, splitting single-cell fragments into pseudobulks, or computing GA4GH refget sequence digests. NOT for training region embeddings (use alterlab-geniml) or non-genomic spatial joins (use alterlab-geopandas). Part of the AlterLab Academic Skills suite.

Knowledge-graph-augmented retrieval. Entity and triple extraction, graph construction (Neo4j, LlamaIndex PropertyGraphIndex), hierarchical community summarization (Microsoft GraphRAG), personalized PageRank (HippoRAG), multi-hop traversal retrieval, and hybrid graph + vector pipelines. USE WHEN: user mentions "GraphRAG", "HippoRAG", "knowledge graph RAG", "entity extraction", "multi-hop reasoning", "Neo4j RAG", "LlamaIndex property graph", "LangChain graph retriever", "triple extraction", "community summarization" DO NOT USE FOR: vanilla vector RAG - use `rag-patterns`; multimodal inputs - use `multimodal-rag`; production indexing ops - use `rag-production`; hallucination checks - use `rag-guardrails`

When the user wants to audit, review, or diagnose SEO issues on their site. Also use when the user mentions "SEO audit," "technical SEO," "why am I not ranking," "SEO issues," "on-page SEO," "meta tags review," "SEO health check," "my traffic dropped," "lost rankings," "not showing up in Google," "site isn't ranking," "Google update hit me," "page speed," "core web vitals," "crawl errors," or "indexing issues." Use this even if the user just says something vague like "my SEO is bad" or "help with SEO" — start with an audit. For building pages at scale to target keywords, see programmatic-seo. For adding structured data, see schema. For AI search optimization, see ai-seo.

Build, audit, debug, and migrate websites for durable organic discovery and reliable use by search engines, LLMs, and browser agents. Use for SEO audits or implementation; new sites, routes, templates, CMSs, catalogs, or content programs; crawling, rendering, indexing, robots, canonicals, redirects, sitemaps, hreflang, structured data, metadata, links, faceted navigation, JavaScript SEO, Core Web Vitals, or migrations; keyword, intent, architecture, content, local, media, or authority work; traffic, ranking, CTR, or indexation losses; AEO, GEO, AI Overviews, AI Mode, ChatGPT search, crawler controls, agent-readable pages, Markdown representations, `Accept: text/markdown` content negotiation, `llms.txt`, WebMCP, or agent interaction design. Trigger whenever code or architecture can materially affect public discoverability or machine usability, even if the user does not say SEO. Do not use for paid-search management alone.