All Skills

Git discipline — atomic commits, conventional messages, branch strategy, PR review patterns, git archaeology for debugging, and recovery patterns.

Next.js App Router — Agent Arena Patterns

SKILL — Color Theory

Vyper Mastery

SKILL — Brand Systems

Scout research skill — Market Sizing

Test coverage and quality review — what needs tests, test quality assessment, anti-patterns, and the testing pyramid for Next.js + Supabase applications.

Foundry Testing & Toolchain

Comprehensive guide for Manim Community - Python framework for creating mathematical animations and educational videos with programmatic control

Check current Railway project status for this directory. Use when user asks "railway status", "is it running", "what's deployed", "deployment status", or about uptime. NOT for variables or configuration queries - use railway-environment skill for those.

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model.

Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

Search and deploy services from Railway's template marketplace. Use when user wants to add a service from a template, find templates for a specific use case, or deploy tools like Ghost, Strapi, n8n, Minio, Uptime Kuma, etc. For databases (Postgres, Redis, MySQL, MongoDB), prefer the railway-database skill.

Interactive scientific and statistical data visualization library for Python. Use when creating charts, plots, or visualizations including scatter plots, line charts, bar charts, heatmaps, 3D plots, geographic maps, statistical distributions, financial charts, and dashboards. Supports both quick visualizations (Plotly Express) and fine-grained customization (graph objects). Outputs interactive HTML or static images (PNG, PDF, SVG).

Manage Railway deployments - view logs, redeploy, restart, or remove deployments. Use for deployment lifecycle (remove, stop, redeploy, restart), deployment visibility (list, status, history), and troubleshooting (logs, errors, failures, crashes). NOT for deleting services - use railway-environment skill with isDeleted for that.

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Implements the NOWAIT technique for efficient reasoning in R1-style LLMs. Use when optimizing inference of reasoning models (QwQ, DeepSeek-R1, Phi4-Reasoning, Qwen3, Kimi-VL, QvQ), reducing chain-of-thought token usage by 27-51% while preserving accuracy. Triggers on "optimize reasoning", "reduce thinking tokens", "efficient inference", "suppress reflection tokens", or when working with verbose CoT outputs.

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.

Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, for computational materials science.

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

Cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Enables building and training quantum circuits with automatic differentiation, seamless integration with PyTorch/JAX/TensorFlow, and device-independent execution across simulators and quantum hardware (IBM, Amazon Braket, Google, Rigetti, IonQ, etc.). Use when working with quantum circuits, variational quantum algorithms (VQE, QAOA), quantum neural networks, hybrid quantum-classical models, molecular simulations, quantum chemistry calculations, or any quantum computing tasks requiring gradient-based optimization, hardware-agnostic programming, or quantum machine learning workflows.

Inspect GitHub PR checks with gh, pull failing GitHub Actions logs, summarize failure context, then create a fix plan and implement after user approval. Use when a user asks to debug or fix failing PR CI/CD checks on GitHub Actions and wants a plan + code changes; for external checks (e.g., Buildkite), only report the details URL and mark them out of scope.

Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots (Hamilton STAR, Opentrons OT-2, Tecan EVO), integrating lab equipment, managing deck layouts and resources (plates, tips, containers), reading plates, or creating reproducible laboratory protocols. Applicable for both simulated protocols and physical hardware control.

Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.

Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

Browser automation with persistent page state. Use when users ask to navigate websites, fill forms, take screenshots, extract web data, test web apps, or automate browser workflows. Trigger phrases include "go to [url]", "click on", "fill out the form", "take a screenshot", "scrape", "automate", "test the website", "log into", or any browser interaction request.

Scan secret scanner operations. Auto-activating skill for Security Fundamentals. Triggers on: secret scanner, secret scanner Part of the Security Fundamentals skill category. Use when working with secret scanner functionality. Trigger with phrases like "secret scanner", "secret scanner", "secret".

Create changelog creator operations. Auto-activating skill for DevOps Basics. Triggers on: changelog creator, changelog creator Part of the DevOps Basics skill category. Use when working with changelog creator functionality. Trigger with phrases like "changelog creator", "changelog creator", "changelog".

Configure sqs queue setup operations. Auto-activating skill for AWS Skills. Triggers on: sqs queue setup, sqs queue setup Part of the AWS Skills skill category. Use when working with sqs queue setup functionality. Trigger with phrases like "sqs queue setup", "sqs setup", "sqs".

Generate mock generator operations. Auto-activating skill for Test Automation. Triggers on: mock generator, mock generator Part of the Test Automation skill category. Use when working with mock generator functionality. Trigger with phrases like "mock generator", "mock generator", "mock".

Process csv processor operations. Auto-activating skill for Business Automation. Triggers on: csv processor, csv processor Part of the Business Automation skill category. Use when working with csv processor functionality. Trigger with phrases like "csv processor", "csv processor", "csv".

Manage api key manager operations. Auto-activating skill for Security Fundamentals. Triggers on: api key manager, api key manager Part of the Security Fundamentals skill category. Use when working with APIs or building integrations. Trigger with phrases like "api key manager", "api manager", "api".

Audit Trail Helper - Auto-activating skill for Enterprise Workflows. Triggers on: audit trail helper, audit trail helper Part of the Enterprise Workflows skill category. Use when analyzing or auditing audit trail helper. Trigger with phrases like "audit trail helper", "audit helper", "audit".