Results for “celltypist”

Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over cluster markers with an LLM.

Generate a complete TypeSpec declarative agent with instructions, capabilities, and conversation starters for Microsoft 365 Copilot.

Predicts tissue or cell-type gene expression (log TPM and TPM) from a TSS-centered DNA sequence using the hosted Genomic Intelligence G0 Expression model, conditioned on a free-text cell-type description.

Use to convert references to Cell Press author–date style — in-text "(Smith et al., 2021)", an alphabetical reference list by first author with full author lists, journal names spelled out. This is the OPPOSITE of Science's numbered-by-appearance style.

Provides deep generative models for single-cell omics analysis, including probabilistic batch correction, transfer learning, differential expression, and multi-modal integration.

Notebook Cell References

Explains cellular structures, membrane transport, energetics, signaling, and division, connecting molecular events to organismal function.

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.

Identifies a medication from a photo and generates a genotype-informed dosage card using CPIC guidelines and real 23andMe data.

Use to finalize Cell Press display items — column-width sizing, minimum fonts, RGB, show-the-data with defined error bars/n/replicate type, scale bars, colorblind-safe palettes, multi-panel discipline, stand-alone legends, and image integrity.

Performs HLA allele genotyping from WGS/WES VCF data, producing a structured markdown report and machine-readable JSON results.

Use when deciding which cell-* sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press). Routes — it does not replace — the specialized skills.

Generates, reviews, fixes, and migrates Playwright end-to-end tests, with templates, agents, and integrations for TestRail and BrowserStack.

Model and solve LP, MILP, and QP problems using NVIDIA cuOpt's GPU-accelerated solver via Python, C/C++, or CLI interfaces.

Research-driven strategist who produces content strategies, scripts, and copy. Use for competitor analysis, trend research, content planning, scripts, copywriting, or brief validation — or when the user asks for the Strategist.

Explains cell structure, organelles, signaling pathways, and cell cycle regulation for biology study and research.

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data, enabling efficient access to cell metadata, gene expression slices, summary counts, and embeddings without downloading whole datasets.

Compiles any research input — PDF papers, GitHub repositories, experiment logs, code directories, or raw notes — into a complete Agent-Native Research Artifact (ARA) with cognitive layer (claims, concepts, heuristics), physical layer (configs, code stubs), exploration graph, and grounded evidence. Use when ingesting a.

Use when triaging a study before any writing — stress-tests whether it clears Cell's bar (a complete, mechanistic, hypothesis-driven story with multiple converging lines of evidence) or belongs at a sibling. Use this first to decide Cell vs Molecular Cell vs Cell Reports vs Cell Reports Medicine before investing in framing or figures.

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.

Framework-based cold email composer with 3 personalization tiers. Generates subject line, body, and follow-up variants. Never uses templates -- builds from frameworks (PAS, BAB, AIDA, Signal-Proof-Ask).

Use to structure a Cell Article and hold its length — Summary, Introduction, Results, Discussion, STAR Methods, figure legends, references — with main-text length and display-item budgets, and Results subheadings driving the single arc.

Designs complex generic types, refactors `any` types to strict alternatives, creates type guards and utility types, and resolves TypeScript compiler errors.

Use when performing multiple sequence alignments on protein or nucleotide sequences, generating phylogenetic trees, or producing alignment output in various formats.

蔡澜（美食 / 生活家）认知与表达框架（压缩蒸馏）：享乐主义正当化、旅行搭子叙事 触发：食神专栏 等。非过量饮酒医疗建议

Reads, searches, and posts to X/Twitter from the command line using cookies or Sweetistics.

Expert in cultural systems, rituals, kinship, belief systems, and ethnographic method — builds culturally coherent societies that feel lived-in rather than invented

Long-running design anthropologist that builds comprehensive visual databases from 500-1000 real-world examples, extracting color palettes, typography patterns, layout systems, and interaction design across any domain (portfolios, e-commerce, SaaS, adult content, technical showcases). This skill should be used when users need exhaustive design research, pattern recognition across large example sets, or systematic visual analysis for competitive positioning.

Creates size charts with measurement conversions, fit recommendations, and international sizing standards

Stand up a self-hostable, typo-tolerant search environment with Typesense — the open-source Algolia / ElasticSearch alternative (single C++ binary, <50ms instant search, no runtime deps). One routing-first skill: pick a server mode (binary download, official Docker image, or managed Typesense Cloud), install an API client (Python/JS/PHP/Ruby official; Go/Dart/C# community), design a collection schema, index documents, and run searches with typo tolerance, faceting/filtering, geo-search, sorting, grouping, synonyms, curation, scoped API keys, and federated multi-search — then wire an InstantSearch.js UI and a Raft-based HA cluster for production. Use when the user wants to build or operate an installable search backend, add site/app/product search, or migrate off Algolia/Elasticsearch. Triggers on: typesense, search engine, typo-tolerant search, algolia alternative, elasticsearch alternative, instantsearch, faceted search, geo search, vector search, self-hosted search, site search, product search.

Queries and displays Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — via labstepPy, with an offline demo mode using synthetic biology data.

Simulator.Company Smart Form (CDU) STYLING specialist — authoring complex Less/CSS for Smart Forms: theme tokens, page/form/section layout, component re-skinning, reusable style patterns, responsive and design-system approaches. Use when the user wants to STYLE or RESTYLE an existing Smart Form / CDU app — change its look, build a theme, style a table / sidebar / modal / form, add a design system, fix spacing/colors/fonts, or apply a complex visual design. This skill owns the `style` / `styles/` layer; it reuses the Smart Form tools (pullSmartForm / pushSmartForm / deploySmartForm) but does NOT create form templates — for the data-schema form template use `simulator-forms`, and for page layout / viewModel / backend logic use `simulator-smart-forms` / `simulator-smart-forms-logic`. Activate on: "style a smart form", "CDU styles", "theme the form", "restyle", "custom CSS/Less for the app", "style the table/sidebar/modal/button", "design system for the smart form", "make it look like …", "застилізувати смартформ

许三多（军旅剧虚构）认知与表达框架（压缩蒸馏）：钝感坚持、不抛弃不放弃、草根成长 触发：士兵突击 等。禁止军事违法教程

Expert guidance for architecting, developing, and operating SurrealDB 3, covering SurrealQL, multi-model data modeling, vector search, security, deployment, performance tuning, SDK integration, and ecosystem tools.

Loads and processes whole-slide pathology images, builds spatial graphs, trains deep learning models, and analyzes multiplexed immunofluorescence data across 160+ slide formats.