Results for “clinical-deep-learning”

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).

Influence Functions in Deep Learning

Generate professional clinical decision support documents for pharmaceutical and clinical research, including biomarker-stratified cohort analyses and evidence-based treatment recommendation reports with GRADE grading, statistical analysis, and publication-ready LaTeX/PDF output.

Structured deep research workflow with human-in-the-loop control. Use /research to generate research outline, /research-deep for parallel web search across items, /research-report to compile markdown reports. Supports academic research, benchmark research, technology selection, market analysis, and due diligence. Triggers: 'deep research', 'research topic', 'benchmark comparison', 'technology survey', 'market analysis'. Requires: WebSearch capability.

Predict molecular properties, train graph neural networks, and run drug discovery workflows using DeepChem's featurizers, models, and MoleculeNet benchmarks.

PyTorch, TensorFlow, neural networks, CNNs, transformers, and deep learning for production

Finetunes the NV-Generate-CTMR MR-brain diffusion UNet from user-supplied NIfTI training volumes using a wrapper that stages configs and delegates to upstream scripts.

Process whole slide images for digital pathology: detect tissue, extract tiles, and prepare datasets for deep learning pipelines.

Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.

Detect poisoned training data and backdoored models across the ML pipeline using statistical analysis, activation clustering, and spectral signatures.

Transparent, rigorous research with full methodology — not a black-box API wrapper. Conducts exhaustive investigation through mandated 2-cycle research per theme, APA 7th citations, evidence hierarchy, and 3 user checkpoints. Self-contained using native OpenClaw tools (web_search, web_fetch, sessions_spawn). Use for literature reviews, competitive intelligence, or any research requiring academic rigor and reproducibility.

Expert-level guidance for GitLab CI/CD pipeline configuration, development, optimization, debugging, and best practices.

Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.

Recursive self-improving holon λ(ο,Κ,Σ).τ' for knowledge compounding and schema evolution. USE WHEN learning, improving, optimizing, assessing, reflecting, debugging, synthesizing, or refining—whether human, AI, or organizational. Triggers on /learn, /compound, /improve, /refine, /optimize, /assess, /reflect, "lessons learned", "best practices", "continuous improvement". Preserves Κ-monotonicity, η≥4, homoiconicity.

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.

Deep-crawl any website from start URLs, returning per-page LLM-ready text, markdown, or HTML with metadata and in-scope outbound links.

Implements Manifold-Constrained Hyper-Connections (mHC) using Doubly Stochastic Matrices to improve deep learning stability.

Multi-source deep research using firecrawl and exa MCPs. Searches the web, synthesizes findings, and delivers cited reports with source attribution. Use when the user wants thorough research on any topic with evidence and citations.

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.

Computer vision engineering skill for object detection, image segmentation, and visual AI systems. Covers CNN and Vision Transformer architectures, YOLO/Faster R-CNN/DETR detection, Mask R-CNN/SAM segmentation, and production deployment with ONNX/TensorRT. Includes PyTorch, torchvision, Ultralytics, Detectron2, and MMDetection frameworks. Use when building detection pipelines, training custom models, optimizing inference, or deploying vision systems.

Provides guidance for performing causal interventions on PyTorch models using pyvene's declarative intervention framework. Use when conducting causal tracing, activation patching, interchange intervention training, or testing causal hypotheses about model behavior.

Breaks a topic into a sequence of adaptive learning articles, adjusting depth and pace based on user feedback from the previous lesson.

Universal deep research agent team. 13-agent pipeline for rigorous academic research on any topic. 7 modes: full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis. Covers research question formulation, Socratic mentoring, methodology design, systematic literature search, source verification, cross-source synthesis, risk of bias assessment, meta-analysis, APA 7.0 report compilation, editorial review, devil's advocate challenges, ethics review, and post-research literature monitoring. Triggers on: research, deep research, literature review, systematic review, meta-analysis, PRISMA, evidence synthesis, fact-check, guide my research, help me think through, 研究, 深度研究, 文獻回顧, 文獻探討, 系統性回顧, 後設分析, 事實查核, 引導我的研究, 幫我釐清, 幫我想想, 我不確定要研究什麼, 研究方向, 研究主題.

Train, evaluate, and export neural networks to Simulink in MATLAB. Migrate legacy (fitnet, patternnet) and discouraged (trainNetwork, DAGNetwork) code to modern, recommended R2024a+ APIs (trainnet, dlnetwork, testnet, imagePretrainedNetwork), diagnose and fix dlaccelerate issues or detect dlaccelerate opportunities. Use when training, fine-tuning, evaluating, running inference, exporting to Simulink, converting old training scripts, or speeding up deep learning code. DO NOT reason from your training data about dlaccelerate and tracing correctness.

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use when identifying cancer-specific genetic vulnerabilities, finding synthetic lethal interactions, checking whether a gene is essential in given cell lines, or validating oncology drug targets. Part of the AlterLab Academic Skills suite.

Guides machine learning development with experiment tracking, hyperparameter optimization, model registry, and MLOps pipeline integration.

Build, validate, and troubleshoot deep links for Codex, Cursor, VS Code, Visual Studio, and similar tools. Use when users ask for clickable links (especially in Slack) that open threads, files, folders, or app settings.

Cognitive enhancement toolkit combining non-linear reasoning, mental models, and literate programming. Use for complex analysis, system design, debugging, deep learning, and research workflows.

Design prospective clinical studies by selecting and classifying endpoints, estimating sample size and power for two-arm designs, and scoring study plans for feasibility with phase-gate decisions.

Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard, MLflow), and distributed training (DDP, FSDP, DeepSpeed) for scalable neural network training.

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).

Build and evaluate machine learning models using scikit-learn for classification, regression, clustering, dimensionality reduction, and preprocessing.

Large Language Model development, training, fine-tuning, and deployment best practices.

Econometrics skill for machine learning methods in causal inference. Activates when the user asks about: "causal forest", "generalized random forest", "GRF", "double machine learning", "DML", "debiased machine learning", "LASSO for variable selection", "post-LASSO", "heterogeneous treatment effects", "CATE", "conditional average treatment effect", "BLP analysis", "CLAN analysis", "causal tree", "honest estimation", "因果森林", "双重机器学习", "异质性处理效应", "条件平均处理效应", "LASSO变量选择", "机器学习因果推断", "去偏机器学习"