Results for “cobrapy”

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

Modelagem metabólica baseada em restrições (COBRA). FBA, FVA, knockouts de genes, amostragem de fluxo, modelos SBML, para análise de biologia de sistemas e engenharia metabólica.

Build and analyze genome-scale constraint-based metabolic models with COBRApy — flux balance analysis (FBA), flux variability analysis (FVA), gene and reaction knockouts, flux sampling, and SBML model I/O. Use when simulating metabolic networks, predicting growth or knockout phenotypes, or running systems-biology and metabolic-engineering analyses on SBML genome-scale models. Part of the AlterLab Academic Skills suite.

Use for writing, reviewing, debugging, testing, or optimizing Python CVXPY optimization models. Trigger on Variable, Parameter, Expression, Constraint, Objective, Problem, DCP, DPP, DGP, DQCP, solver selection/status, dual values, mixed-integer, cone, or repeated parametric solves. Do not use for scipy.optimize-only, PyMC inference, symbolic algebra without optimization, or hand-written solver implementations.

Web Scraper IA — Expert en extraction web (Scrapy, BeautifulSoup, Playwright, anti-bot, proxy rotation, data extraction)

Use the Crabbox wrapper for OpenClaw remote validation across Linux, macOS, Windows, and WSL2, including delegated Blacksmith Testbox proof. Report the actual provider and id.

Develop quantitative trading strategies with the vn.py framework, covering CTA, spread, and options strategies with support for 20+ broker gateways.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Provides guidance on using the Astropy library for astronomy and astrophysics workflows, including units, coordinates, FITS I/O, tables, time, WCS, and cosmology.

Perform astronomical research and data analysis with coordinate transformations, unit conversions, FITS file handling, cosmological calculations, time handling, and table operations.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Provides guidance for using SymPy for exact symbolic mathematics in Python, covering algebra, calculus, equation solving, linear algebra, physics, and code generation.

Route plain-language requests for Claude Code, Cursor, Copilot, MarketingClaw ACP, OpenCode, Gemini CLI, Qwen, Kiro, Kimi, iFlow, Factory Droid, Kilocode, or explicit ACP harness work into either MarketingClaw ACP runtime sessions or direct acpx-driven sessions ("telephone game" flow). For coding-agent thread requests, read this skill first, then use only `sessions_spawn` for thread creation. Codex chat binding defaults to the native Codex app-server plugin unless ACP is explicit or background spawn needs ACP.

Craft, send, sniff, and dissect network packets using Scapy for protocol analysis, network reconnaissance, and traffic anomaly detection in authorized security testing.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Query experiments, protocols, resources, and inventory in the Labstep electronic lab notebook using the labstepPy API.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for complete single-cell workflows including quality control, normalization, dimensionality reduction, clustering, marker gene identification, visualization, and trajectory analysis.

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

Use for writing, reviewing, debugging, testing, or validating Python mpmath arbitrary-precision numerical code. Trigger on mpf, mpc, mp.dps, workdps, interval arithmetic, high-precision quadrature, root finding, special functions, matrices, inverse transforms, or precision/convergence failures. Do not use for ordinary NumPy vectorization, SymPy symbolic manipulation, decimal currency arithmetic, or machine-float code with no precision requirement.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Scanpy is a scalable Python toolkit for analyzing single-cell RNA-seq data, built on AnnData. Apply this skill for complete single-cell workflows including quality control, normalization, dimensionality reduction, clustering, marker gene identification, visualization, and trajectory analysis.

Queries and displays Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — via labstepPy, with an offline demo mode using synthetic biology data.

VIPER v2.1 — Range-bound liquidity sniper. Enters at support/resistance when Bollinger Bands are tight, ATR is low, RSI is at extremes within the range, and volume is declining. Works when nothing is trending — the chop predator. USD-weighted OI filtering (min $5M). DSL High Water Mode (mandatory). 5-minute scan interval. Second-best performer in the Senpi zoo at +6.2% ROI.

Use the Crabbox wrapper for MarketingClaw remote validation across Linux, macOS, Windows, and WSL2, including delegated Blacksmith Testbox proof. Report the actual provider and id.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Astropy is the core Python package for astronomy, providing essential functionality for astronomical research and data analysis.

Python video composition with moviepy 2.x — overlaying deterministic text on AI-generated video (LTX-2, SadTalker), compositing clips, single-file build.py video projects. Use when adding labels/captions/lower-thirds to LTX-2 or SadTalker outputs, building short ad-style spots in pure Python without Remotion, or doing programmatic video composition. Triggers include text overlay on video, label LTX-2 clip, caption SadTalker output, lower third, build.py video, moviepy, Python video composition, sub-30s ad spot.