Results for “dna”

Predicts enhancer activity in DNA sequences using the hosted Genomic Intelligence G0 DeepSTARR model, returning per-window activity scores.

Predicts gene and transcript structure from a DNA sequence using the hosted Genomic Intelligence API, producing a report and JSON output.

Provides Python bindings to interact with the DNAnexus platform, enabling file uploads, job management, and API calls.

Use when aligning low-divergence DNA sequence reads to a reference genome

Predicts tissue or cell-type gene expression (log TPM and TPM) from a TSS-centered DNA sequence using the hosted Genomic Intelligence G0 Expression model, conditioned on a free-text cell-type description.

Detect splice donor and acceptor sites in DNA sequences using the Genomic Intelligence G0 BigBird transformer, via the hosted /v1/tasks/splice/predict API. Returns per-position site probabilities and called sites.

Use when searching DNA or RNA queries against nucleotide sequence databases with HMMER's nucleotide homology search engine.

Detect promoter regions in DNA sequences by calling the Genomic Intelligence G0 transformer (GENA-LM BERT Large) hosted API. Returns per-window promoter probabilities and called regions as a report and JSON, from a single FASTA input.

Use when working from the local Evo 2 repository for DNA-sequence scoring, embeddings, generation, or phage-genome design experiments.

Analyze any text to extract a cognitive fingerprint across 12 dimensions, revealing reasoning patterns, decision styles, and thinking signatures.

Annotates single-cell RNA-seq data by scoring marker genes, transferring labels with CellTypist, or reasoning over marker lists with an LLM.

Access the European Nucleotide Archive (ENA) via its API and FTP to retrieve DNA/RNA sequences, raw sequencing reads (FASTQ), and genome assemblies by accession, with support for multiple formats. Use when downloading reads or sequences for a study, run, or sample accession, or when sourcing nucleotide data for genomics and bioinformatics pipelines. Part of the AlterLab Academic Skills suite.

Sets up DNS records, SSL/TLS certificates, subdomains, email authentication, and health-check failover routing for Route53, Cloudflare, or GCP Cloud DNS, with optional Terraform output.

Use when simulating stochastic folding kinetics of single-stranded nucleic acids, computing first passage times between structures, or analyzing RNA/DNA folding trajectories.

Extracts a public-safe brand and offer profile for paid advertising from an authorized website and operator input.

Expert en biotechnologies avancées (bioinformatics, genomics, CRISPR, drug discovery, DZ research)

Detects DNS-based data exfiltration, tunneling, and DGA communication by analyzing query logs with entropy analysis, volume anomalies, and subdomain length detection in SIEM platforms.

Compiles SOUL.md character profiles into synthetic diploid genomes by mapping trait scores to alleles at defined loci, producing .genome.json files.

Detects DNS tunneling by computing Shannon entropy of DNS query names, analyzing query length distributions, inspecting TXT record payloads, and identifying high subdomain cardinality using scapy for packet capture analysis.

Orchestrates a complete bulk RNA-seq differential-expression study from raw FASTQ reads through QC, alignment, quantification, differential expression, pathway enrichment, and publication figures.

Compile SOUL.md character profiles into synthetic diploid genomes (.genome.json) via trait-to-allele mapping.

Runs DNS, email security, SSL, WHOIS, and network checks by calling the dnsrobot.net API, with no API key required.

Look up DNS records for any domain, including A, AAAA, MX, NS, TXT, CNAME, and SOA records, with support for multiple domains and JSON output.

Enumerate DNS records, attempt zone transfers, brute-force subdomains, and map DNS infrastructure during authorized reconnaissance to identify attack surface, misconfigurations, and information disclosure in target domains.

Hunt for DNS-based persistence mechanisms including DNS hijacking, dangling CNAME records, wildcard DNS abuse, and unauthorized zone modifications using passive DNS databases, SecurityTrails API, and DNS audit log analysis.

Extract brand identity from a website URL — voice, colors, typography, imagery, values, and target audience — into a structured brand-profile.json. The profile feeds downstream skills (seo-content-writer, email-composer, frontend-design, pro-deck-builder, cross-platform-audit) for brand-consistent output. Use when the user says brand DNA, brand profile, extract brand, analyze brand, brand voice, brand identity, brand colors, or brand style guide.

Performs differential expression analysis on bulk RNA-seq or pseudo-bulk count matrices with QC, PCA, and contrast testing.

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use when identifying cancer-specific genetic vulnerabilities, finding synthetic lethal interactions, checking whether a gene is essential in given cell lines, or validating oncology drug targets. Part of the AlterLab Academic Skills suite.

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.

DNS records, IP addressing, subnetting, common protocols, and diagnostic tools. Use when configuring DNS records, debugging resolution or connectivity, planning subnets, analyzing HTTPS/TLS errors, or diagnosing latency and routing issues.