Results for “ensembl”

68 skills

Annotates VCF variants using Ensembl VEP, ClinVar, and gnomAD, ranks them by predicted impact, and generates a reproducible report.

Quickly query genomic reference databases for Ensembl IDs, gene metadata, sequences, BLAST searches, and enrichment analysis using the gget CLI or Python package.

ensemble-methods

Expected error decomposes into bias, variance, and irreducible noise.

automl-configurator

Configures AutoML pipelines with algorithm selection, feature engineering, and ensemble methods

Use when performing multiple sequence alignment of FASTA inputs, generating alignment ensembles, or calculating alignment confidence metrics.

franks-intellab

agentic-kaggle-skill

End-to-end Kaggle competition workflow for scored submissions, covering code competitions, validation, metrics, public notebook/discussion intel, tabular/text/image modeling, tuning, ensembling, multi-notebook architectures, Kaggle GPU offload, and hidden-test debugging.

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alterlab-ensembl

Query the Ensembl genome database REST API across 250+ species for gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, and Variant Effect Predictor (VEP) annotations. Use when mapping gene IDs or coordinates, fetching genomic sequence, finding orthologs across species, or predicting variant consequences for genomic research. Part of the AlterLab Academic Skills suite.

Queries 9 genomic databases in parallel for a given rsID, returning unified GWAS, PheWAS, eQTL, and fine-mapping reports.

Queries 20+ bioinformatics databases from the command line or Python for gene info, sequences, BLAST/BLAT, protein structures, viral data, and expression metrics.

Query 20+ bioinformatics databases from the command line or Python for gene information, sequences, protein structures, enrichment analysis, and more.

30.2k · bundle

Reviews an academic paper using the NeurIPS review form with three reviewer personas, ensemble scoring, and reflection refinement. Extracts text from PDF, runs structured review, and outputs actionable feedback.

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

metinduraktr-44

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

playwright-interactive

Debug local web or Electron apps interactively using a persistent Playwright session with js_repl, enabling fast iterative UI debugging and visual QA.

23.3k · bundle

Generate spectrograms and audio feature visualizations (mel, chroma, MFCC, tempogram, etc.) from audio files via CLI. Useful for audio analysis, music production debugging, and visual documentation.

ai-music-generation

Generate music and songs using ElevenLabs, Diffrythm, and Tencent Song Generation models via the inference.sh CLI.

alterlab-geniml

Machine learning on genomic interval data (BED files) with the geniml Python package — region embeddings (Region2Vec), joint region+metadata embeddings (BEDspace/StarSpace), single-cell ATAC-seq embeddings (scEmbed), consensus peak sets / universes (build-universe), tokenization, BEDshift randomization, and BBClient/BEDbase caching. Use when training or using region/cell embeddings, clustering scATAC-seq, building a tokenization universe from BED collections, or any ML/feature-learning task over genomic regions. NOT for plain interval arithmetic (overlap/intersect/merge counts) — that is gtars, not geniml. Part of the AlterLab Academic Skills suite.

soneta-containers

Uruchamianie i wdrażanie platformy Soneta (enova365, Triva) w kontenerach. Używaj gdy użytkownik: (1) stawia środowisko (server + web) na obrazach Soneta przez `docker compose` albo na Apple `container` / Container Desktop; (2) tworzy bazę danych w kontenerze (usługa init z `dbmgr create`, `--demo`, `--recreate`, licencja, konwersja); (3) wdraża na Kubernetes przez Helm (`helm repo add soneta`, `values.yaml`, `dblist`, `adminMode`); (4) wybiera wersję obrazów (tagi z Docker Hub `soneta/*` lub `registry.soneta.pl`), architekturę (alpine/arm64/amd64), logowanie do registry; (5) potrzebuje SQL Servera — zewnętrznego (`host.docker.internal` / `host.containers.internal`) albo jako kontener `mssql`; (6) rozwiązuje problemy startu stacku (kolejność, port zajęty, brak DNS między usługami w Apple container, zły host-alias). Słowa kluczowe: docker compose, docker-compose.yaml, apple container, Container Desktop, helm, kubernetes, obraz, tag, wersja, mssql, dbmgr, x-init, server.standard, web.standard.

Generate spectrograms and audio feature visualizations (mel, chroma, MFCC, tempogram, etc.) from audio files via CLI. Useful for audio analysis, music production debugging, and visual documentation.

elevenlabs-music-generation

Generate full songs and instrumental tracks with ElevenLabs Music on RunComfy via the `runcomfy` CLI. ElevenLabs Music turns a style description plus structured lyrics into studio-quality 44.1 kHz stereo audio — 5 seconds to 5 minutes — with section-level control (Intro / Verse / Chorus / Bridge), multilingual vocals, and commercial-friendly output. Generate a backing track, a full vocal song, a jingle, a podcast intro, a game loop, or an instrumental bed. Calls `runcomfy run elevenlabs/elevenlabs/music-generation` through the local RunComfy CLI. Triggers on "generate music", "make a song", "AI music", "background music", "instrumental track", "ElevenLabs Music", "soundtrack", "jingle", "theme music", "royalty-free music", "compose", or any explicit ask to generate music or a song from a text description.

lemlist-automation

Automate Lemlist multichannel outreach: manage campaigns, enroll leads, add personalization variables, export campaign data, and handle unsubscribes via the Composio MCP integration.

moving-laterally-with-netexec

Enumerate SMB, WinRM, LDAP, and MSSQL services, validate credentials, spray passwords, and execute commands on remote hosts using NetExec during authorized penetration tests.

24.6k · bundle

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.

Inngest expert for serverless-first background jobs, event-driven workflows, and durable execution without managing queues or workers.

Inngest expert for serverless-first background jobs, event-driven workflows, and durable execution without managing queues or workers. Use when "inngest, serverless background job, event-driven workflow, step function, durable execution, vercel background job, scheduled function, fan out, inngest, serverless, background-jobs, event-driven, workflows, step-functions, durable-execution, vercel, nextjs" mentioned.

Generate .env.example from your .env files. Use when onboarding developers.

Train unsupervised machine learning models on genomic interval data from BED files, including region embeddings, single-cell ATAC-seq analysis, and consensus peak building.

30.2k · bundle

Build serverless background jobs and event-driven workflows with Inngest, covering functions, steps, cron schedules, webhooks, and fan-out patterns.

Facilitates a read-only standup across git worktrees, branches, or PRs to compare changes and produce one consolidation plan.

Narzędzia deweloperskie wiersza poleceń (CLI) platformy Soneta (enova365, Triva). Używaj gdy użytkownik: (1) zarządza bazami danych przez `dbmgr` — tworzy, rejestruje, konwertuje, backup/restore, licencje, rozszerzenia (extensions), analiza, kompilacja; (2) przygotowuje bazę testową/demo z wiersza poleceń albo automatyzuje operacje na bazach w skrypcie/CI; (3) testuje działającą aplikację przez `buscall` — zdalnie steruje programem (nawigacja, formularze, gridy, edycja) i robi zrzuty ekranu; (4) uruchamia aplikację ramki `SonetaFrame` (`SonetaFrameNew`), konfiguruje źródła baz danych (`demo:`, `http`, `docker:`, `process:`, `orchestrator:`) albo pyta o plik ustawień `Settings_Product.json`; (5) pyta o składnię, komendy lub opcje `dbmgr`, `buscall`, `callmcp`, `SonetaFrame`; (6) wspomina „zarządzanie bazą enova", „baza demo", „konwersja bazy", „testowanie na żywej aplikacji", „ramka Soneta". Sięgnij też, gdy inny skill potrzebuje operacji na bazie lub weryfikacji zmian na uruchomionej aplikacji.

Integrate with EVM blockchains using viem and wagmi for wallet connection, contract reads/writes, event subscriptions, multicall, and multi-chain support.

Inngest expert for serverless-first background jobs, event-driven workflows, and durable execution without managing queues or workers. Use when: inngest, serverless background job, event-driven workflow, step function, durable execution.

Inngest expert for serverless-first background jobs, event-driven workflows, and durable execution without managing queues or workers.

Trains machine learning models on genomic interval data from BED files, including region embeddings, single-cell ATAC-seq analysis, and consensus peak building.

Inngest expert for serverless-first background jobs, event-driven workflows, and durable execution without managing queues or workers.

name: ing description: Ing namespace for Netsnek e.U. engineering workflow automation. Streamlines build pipelines, deployment orchestration, and infrastructure provisioning for development teams. ...