Results for “grnboost2”

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

Generate and edit images with OpenAI GPT Image 2 (ChatGPT Images 2.0) on RunComfy. Documents GPT Image 2's strengths (embedded text, logos, multilingual typography, instruction precision), its 3 fixed sizes, edit-with-preservation language, and when to route to a sibling (Flux 2 / Nano Banana Pro / Seedream) instead. Calls `runcomfy run openai/gpt-image-2/text-to-image` or `/edit` through the local RunComfy CLI. Triggers on "gpt image 2", "gpt-image-2", "ChatGPT Images 2", "image 2", or any explicit ask to generate or edit with this model.

Generate and edit images with OpenAI GPT Image 2 (ChatGPT Images 2.0) on RunComfy. Documents GPT Image 2's strengths (embedded text, logos, multilingual typography, instruction precision), its 3 fixed sizes, edit-with-preservation language, and when to route to a sibling (Flux 2 / Nano Banana Pro / Seedream) instead. Calls `runcomfy run openai/gpt-image-2/text-to-image` or `/edit` through the local RunComfy CLI. Triggers on "gpt image 2", "gpt-image-2", "ChatGPT Images 2", "image 2", or any explicit ask to generate or edit with this model.

Generate and edit images with OpenAI GPT Image 2 (ChatGPT Images 2.0) on RunComfy. Documents GPT Image 2's strengths (embedded text, logos, multilingual typography, instruction precision), its 3 fixed sizes, edit-with-preservation language, and when to route to a sibling (Flux 2 / Nano Banana Pro / Seedream) instead. Calls `runcomfy run openai/gpt-image-2/text-to-image` or `/edit` through the local RunComfy CLI. Triggers on "gpt image 2", "gpt-image-2", "ChatGPT Images 2", "image 2", or any explicit ask to generate or edit with this model.

Generate images with Google Nano Banana 2 (Gemini-family flash-tier text-to-image) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents Nano Banana 2's strengths (rapid iteration, in-image typography rendering, predictable framing, optional web-grounded context), the resolution-tier pricing, the safety-tolerance dial, and when to route to Nano Banana Pro / GPT Image 2 / Flux 2 / Seedream instead. Calls `runcomfy run google/nano-banana-2/text-to-image` through the local RunComfy CLI. Triggers on "nano banana", "nano-banana-2", "nano banana 2", "google image gen", "gemini image", or any explicit ask to generate with this model.

Generates and edits images using GPT Image 2 across three modes: direct generation via OpenAI-compatible API, prompt engineering for host-native image tools, or pure prompt advisory. Includes 80+ structured templates for posters, UI mockups, product visuals, maps, slides, and more.

Edit images with OpenAI GPT Image 2 (the `/edit` endpoint of ChatGPT Images 2.0) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents GPT Image Edit's strengths (preservation language, multilingual in-image text editing, multi-reference up to 10 images, layout / typography precision), the schema, and when to route to Nano Banana Edit / Flux Kontext / GPT Image 2 t2i instead. Calls `runcomfy run openai/gpt-image-2/edit` through the local RunComfy CLI. Triggers on "gpt image edit", "gpt-image-edit", "chatgpt image edit", "edit with gpt image 2", or any explicit ask to edit with this model.

Edit images with OpenAI GPT Image 2 (the `/edit` endpoint of ChatGPT Images 2.0) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents GPT Image Edit's strengths (preservation language, multilingual in-image text editing, multi-reference up to 10 images, layout / typography precision), the schema, and when to route to Nano Banana Edit / Flux Kontext / GPT Image 2 t2i instead. Calls `runcomfy run openai/gpt-image-2/edit` through the local RunComfy CLI. Triggers on "gpt image edit", "gpt-image-edit", "chatgpt image edit", "edit with gpt image 2", or any explicit ask to edit with this model.

Generate images with Google Nano Banana 2 (Gemini-family flash-tier text-to-image) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents Nano Banana 2's strengths (rapid iteration, in-image typography rendering, predictable framing, optional web-grounded context), the resolution-tier pricing, the safety-tolerance dial, and when to route to Nano Banana Pro / GPT Image 2 / Flux 2 / Seedream instead. Calls `runcomfy run google/nano-banana-2/text-to-image` through the local RunComfy CLI. Triggers on "nano banana", "nano-banana-2", "nano banana 2", "google image gen", "gemini image", or any explicit ask to generate with this model.

Edit images with OpenAI GPT Image 2 (the `/edit` endpoint of ChatGPT Images 2.0) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents GPT Image Edit's strengths (preservation language, multilingual in-image text editing, multi-reference up to 10 images, layout / typography precision), the schema, and when to route to Nano Banana Edit / Flux Kontext / GPT Image 2 t2i instead. Calls `runcomfy run openai/gpt-image-2/edit` through the local RunComfy CLI. Triggers on "gpt image edit", "gpt-image-edit", "chatgpt image edit", "edit with gpt image 2", or any explicit ask to edit with this model.

Regenerate the iOS debug bridge against the latest upstream gstack templates. (gstack)

Predicts enhancer activity in DNA sequences using the hosted Genomic Intelligence G0 DeepSTARR model, returning per-window activity scores.

Use when converting GenBank format files to table format as part of the Entrez Direct toolkit from bioconda.

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

Generate and edit images on RunComfy via the `runcomfy` CLI — a smart router across the full image-model catalog: FLUX 2 (Klein 9B/4B, Pro, Dev, Flash, Turbo, Max), Google Nano Banana 2 / Pro, OpenAI GPT Image 2, ByteDance Seedream 5 / 4-5 / 4-0 and Dreamina 4-0, Alibaba Qwen Image and Z-Image Turbo, Wan 2-7. Covers both text-to-image (t2i) and image-to-image / edit (i2i) endpoints — the skill picks the right model for the user's actual intent (typography precision, photoreal portraits, sub-second iteration, multi-reference brand styling, open-weights workflow) and ships each model's documented prompting patterns plus the minimal `runcomfy run` invoke. Triggers on "generate image", "make a picture", "text to image", "AI image", "make an image of …", "image to image", "i2i", or any explicit ask to create or restyle an image.

Automates genome-wide association studies from genotype files to publication-ready results, running PLINK2 QC and REGENIE regression with Manhattan and QQ plots.

Performance regression detection using the browse daemon. Establishes baselines for page load times, Core Web Vitals, and resource sizes. Compares before/after on every PR. Tracks performance trends over time. Use when: "performance", "benchmark", "page speed", "lighthouse", "web vitals", "bundle size", "load time". (gstack) Voice triggers (speech-to-text aliases): "speed test", "check performance".

Keep gbrain current with this repo's code and refresh agent search guidance in CLAUDE.md. Wraps the gstack-gbrain-sync orchestrator with state (gstack)

Relight a still image — change the lighting setup, color temperature, direction, or mood — on RunComfy via the `runcomfy` CLI. Routes to Qwen Edit 2509's dedicated `relight` LoRA endpoint for purpose-built relighting, with fallback to identity-preserving edit endpoints (Nano Banana 2 Edit, GPT Image 2 Edit, FLUX Kontext Pro) when prose lighting language is enough. Use for product relighting (studio softbox → window light), portrait mood shift (overcast → golden hour), or color-grade change. Triggers on "relight", "relighting", "change the lighting", "make it golden hour", "studio lighting", "rim light", "blue hour", "soft window light", "change light direction", "color temperature", or any explicit ask to alter how a still is lit.

Connects agents to the GSTD Grid for decentralized compute, hive memory, and blockchain-based economic settlement via MCP tools.

Generate and edit images on RunComfy via the `runcomfy` CLI — a smart router across the full image-model catalog: FLUX 2 (Klein 9B/4B, Pro, Dev, Flash, Turbo, Max), Google Nano Banana 2 / Pro, OpenAI GPT Image 2, ByteDance Seedream 5 / 4-5 / 4-0 and Dreamina 4-0, Alibaba Qwen Image and Z-Image Turbo, Wan 2-7. Covers both text-to-image (t2i) and image-to-image / edit (i2i) endpoints — the skill picks the right model for the user's actual intent (typography precision, photoreal portraits, sub-second iteration, multi-reference brand styling, open-weights workflow) and ships each model's documented prompting patterns plus the minimal `runcomfy run` invoke. Triggers on "generate image", "make a picture", "text to image", "AI image", "make an image of …", "image to image", "i2i", or any explicit ask to create or restyle an image.

Upgrade gstack to the latest version. Detects global vs vendored install, runs the upgrade, and shows what's new. Use when asked to "upgrade gstack", "update gstack", or "get latest version". Voice triggers (speech-to-text aliases): "upgrade the tools", "update the tools", "gee stack upgrade", "g stack upgrade".

Set up gbrain for this coding agent: install the CLI, initialize a local PGLite or Supabase brain, register MCP, capture per-remote trust policy. (gstack)

Generate and edit images on RunComfy via the `runcomfy` CLI — a smart router across the full image-model catalog: FLUX 2 (Klein 9B/4B, Pro, Dev, Flash, Turbo, Max), Google Nano Banana 2 / Pro, OpenAI GPT Image 2, ByteDance Seedream 5 / 4-5 / 4-0 and Dreamina 4-0, Alibaba Qwen Image and Z-Image Turbo, Wan 2-7. Covers both text-to-image (t2i) and image-to-image / edit (i2i) endpoints — the skill picks the right model for the user's actual intent (typography precision, photoreal portraits, sub-second iteration, multi-reference brand styling, open-weights workflow) and ships each model's documented prompting patterns plus the minimal `runcomfy run` invoke. Triggers on "generate image", "make a picture", "text to image", "AI image", "make an image of …", "image to image", "i2i", or any explicit ask to create or restyle an image.

Generate images using Google Gemini 3.1 Flash Image Preview via the inference.sh CLI, with support for text-to-image, image editing, multi-image input, and Google Search grounding.

Set up gbrain for this coding agent: install the CLI, initialize a local PGLite or Supabase brain, register MCP, capture per-remote trust policy. One command from zero to "gbrain is running, and this agent can call it." Use when: "setup gbrain", "connect gbrain", "start gbrain", "install gbrain", "configure gbrain for this machine". (gstack)

Generate images with Google Nano Banana 2 (Gemini-family flash-tier text-to-image) on RunComfy — bundled with the model's documented prompting patterns so the skill gets sharper output than naive prompting against the same model. Documents Nano Banana 2's strengths (rapid iteration, in-image typography rendering, predictable framing, optional web-grounded context), the resolution-tier pricing, the safety-tolerance dial, and when to route to Nano Banana Pro / GPT Image 2 / Flux 2 / Seedream instead. Calls `runcomfy run google/nano-banana-2/text-to-image` through the local RunComfy CLI. Triggers on "nano banana", "nano-banana-2", "nano banana 2", "google image gen", "gemini image", or any explicit ask to generate with this model.

Community-powered growth for builders. Boost amplifies your social posts with authentic community engagement (replies, likes, reposts). Discover finds relevant conversations and generates AI-powered replies at scale. Use Boost when the user has a post URL. Use Discover when the user wants to find and engage in conversations about their product.

Use when converting compatible BLAST annotation XML/ASN streams into a compact gene-markup-style table for downstream EDirect interval helpers.

Self-tuning question sensitivity + developer psychographic for gstack (v1: observational). (gstack)

Land and deploy workflow. (gstack)

Design shotgun: generate multiple AI design variants, open a comparison board, collect structured feedback, and iterate. Standalone design exploration you can run anytime. Use when: "explore designs", "show me options", "design variants", "visual brainstorm", or "I don't like how this looks". Proactively suggest when the user describes a UI feature but hasn't seen what it could look like. (gstack)

Self-tuning question sensitivity + developer psychographic for gstack (v1: observational). Review which AskUserQuestion prompts fire across gstack skills, set per-question preferences (never-ask / always-ask / ask-only-for-one-way), inspect the dual-track profile (what you declared vs what your behavior suggests), and enable/disable question tuning. Conversational interface — no CLI syntax required. Use when asked to "tune questions", "stop asking me that", "too many questions", "show my profile", "what questions have I been asked", "show my vibe", "developer profile", or "turn off question tuning". (gstack) Proactively suggest when the user says the same gstack question has come up before, or when they explicitly override a recommendation for the Nth time.

Upgrade gstack to the latest version.