Results for “morphosyntax”

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Convert chemical structures (SMILES or RDKit molecules) into numerical representations for machine learning, covering 100+ featurizers including ECFP, MACCS, descriptors, and pretrained models like ChemBERTa, with support for QSAR modeling and virtual screening.

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Featurização molecular para ML (100+ featurizadores). ECFP, MACCS, descritores, modelos pré-treinados (ChemBERTa), converter SMILES em features, para QSAR e ML molecular.

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Convert chemical structures (SMILES or RDKit molecules) into numerical representations for machine learning using 100+ featurizers, including ECFP, MACCS, descriptors, and pretrained models like ChemBERTa.

Orchestrates three frontier models to debate a question and synthesizes their best insights into a single superior answer.

Process and analyze mass spectrometry data: import spectra from MGF, mzML, MSP, and JSON formats; apply 40+ filters for metadata harmonization and peak cleaning; compute spectral similarities (cosine, modified cosine) for compound identification; build reproducible processing pipelines.

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Simplify molecular cheminformatics with a Pythonic wrapper around RDKit for SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, and parallel processing.

Use kordoc for agent-native HWP/HWPX document parsing, JSON extraction, diffing, form-field extraction, and Markdown→HWPX reverse conversion (read/convert only — for binary editing use rhwp-edit).

Holarchic reasoning framework implementing λ-calculus over simplicial complexes. Entities (ο) transform through operations (λ) toward terminals (τ) via the universal form λο.τ. Persistent homology captures multi-scale structure; sheaf theory ensures local-to-global consistency. Use when knowledge requires: (1) homoiconic self-reference where structure mirrors content, (2) scale-invariant holonic decomposition, (3) topological invariants preserved across transformations, or (4) formal Lex-style axiom systems over property graphs.

Use for writing, reviewing, debugging, testing, or optimizing Python SymPy symbolic mathematics. Trigger on Symbol, assumptions, Expr, Eq, solve/solveset, simplify, factor, expand, calculus, matrices, exact arithmetic, lambdify, code generation, or symbolic-to-numeric conversion. Do not use for NumPy-only arrays, mpmath-only arbitrary-precision numerics, CVXPY optimization models, or parsing untrusted mathematical text.

杰诺斯（少年漫）认知与表达框架（压缩蒸馏）：改造人认真、战损美学、师徒忠犬 触发：一拳超人 等。虚构

Defines structural schemas, data ontologies, and interaction boundaries for autonomous entities and synthetic data architectures.

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Run full computational-pathology workflows with PathML — whole-slide-image (WSI) analysis across 160+ slide formats, multiplexed immunofluorescence (CODEX, Vectra, MERFISH), nucleus segmentation/classification (HoVer-Net, HACTNet), tissue- and cell-graph construction, HDF5 dataset management, and deep-learning model training on pathology data. Use when the user builds end-to-end deep-learning pathology pipelines, analyzes multiplexed or spatial-proteomics slides, or segments nuclei. For lightweight H&E slide preprocessing, tissue masking, or plain Random/Grid/Score tile extraction prefer alterlab-histolab instead. Part of the AlterLab Academic Skills suite.

Nemotron-4 340B Technical Report

Wraps RDKit in a high-level, pandas-friendly datamol interface with sensible defaults for everyday drug discovery — SMILES/SDF loading into DataFrames, molecule standardization, descriptors, fingerprints, Butina clustering, 3D conformer generation, scaffold analysis, and parallel batch processing, returning native rdkit.Chem.Mol objects. Use when running standard cheminformatics pipelines on molecule tables with minimal boilerplate; for low-level control, custom sanitization, or specialized algorithms prefer alterlab-rdkit. Part of the AlterLab Academic Skills suite.

安室透（少年推理漫）认知与表达框架（压缩蒸馏）：三重身份张力、波本梗、服务生伪装 触发：名侦探柯南 等。虚构；禁止犯罪教唆

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

莫言（作家）认知与表达框架（压缩蒸馏）：魔幻乡土、感官暴力与民间口语 触发：红高粱、诺奖演说 等。虚构；非煽动

Universal Reasoning Framework implementing λο.τ calculus over holarchic structures. Provides severity-based routing (R0-R3 pipelines), modular cognitive architecture (DEC, EVL, PAT, SYN, MEA, HYP, INT), fractal execution patterns, multi-level validation (η≥4, KROG), and adaptive learning. Triggers on: (1) complex multi-step reasoning, (2) high-stakes decisions requiring validation, (3) research synthesis across domains, (4) system design and architecture, (5) crisis management, (6) performance optimization. Implements scale-invariant reasoning from micro (tool calls) through meso (skill composition) to macro (orchestrated workflows).

Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization, specialized fingerprint or descriptor algorithms, reaction enumeration, or conformer generation demand direct API control; for a high-level pandas-friendly wrapper over RDKit prefer alterlab-datamol, and for turning molecules into ML feature vectors prefer alterlab-molfeat. Part of the AlterLab Academic Skills suite.

Translates English text paragraph by paragraph into Chinese and provides deep linguistic analysis covering vocabulary, phrases, grammar, voice, syntax, and sentence structure.

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Análise de espectrometria de massas. Processa mzML/MGF/MSP, similaridade espectral (cosine, modified cosine), harmonização de metadados, identificação de compostos, para metabolômica e processamento de dados MS.

Pythonic wrapper around RDKit for cheminformatics, simplifying SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, and parallel processing while returning native rdkit.Chem.Mol objects.

Maps a codebase into feature-grouped flowcharts, identifies duplicated concerns across features, and proposes a unified architecture with handoff prompts for refactoring.

苏轼（古典诗人）认知与表达框架（压缩蒸馏）：旷达与自嘲、儒释道混搭比喻、生活哲学化… 触发：东坡、赤壁 等。引文须核对版本

Migrates data from MongoDB, PostgreSQL, MySQL, Neo4j, Kafka, and JSONL into SurrealDB with full and incremental CDC synchronization.

Foundational SPARQL patterns covering RDF querying, triple patterns, graph patterns, and semantic web fundamentals. Use when querying RDF data or working with knowledge graphs. This is the entry point for SPARQL development.

Train Mixture of Experts (MoE) models using DeepSpeed or HuggingFace. Use when training large-scale models with limited compute (5× cost reduction vs dense models), implementing sparse architectures like Mixtral 8x7B or DeepSeek-V3, or scaling model capacity without proportional compute increase. Covers MoE architectures, routing mechanisms, load balancing, expert parallelism, and inference optimization.

Implements Manifold-Constrained Hyper-Connections (mHC) using Doubly Stochastic Matrices to improve deep learning stability.

Design, select, and analyze waveforms for radar, sonar, and active sensing using the Phased Array System Toolbox. Covers LFM, NLFM, FMCW, phase-coded, CW, stepped FM, custom IQ, ambiguity functions, sidelobe reduction, and Doppler tolerance. Key objects: phased.LinearFMWaveform, phased.NonlinearFMWaveform, phased.CustomFMWaveform, phased.PhaseCodedWaveform, phased.FMCWWaveform, phased.SteppedFMWaveform, phased.MFSKWaveform, phased.RectangularWaveform, nlfmspec2freq, shapespectrum, ambgfun, pambgfun, sidelobelevel, legendreseq, mlseq, radarWaveformGenerator.