Results for “scembed”

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.

Generate, predict, and embed protein sequences and structures using ESM3, ESMC, and ESMFold2 with local or cloud inference.

Expert guidance for distributed training with DeepSpeed - ZeRO optimization stages, pipeline parallelism, FP16/BF16/FP8, 1-bit Adam, sparse attention

S-parameters, insertion loss, fields, currents, mesh control, and solver selection for RF PCB performance validation. TRIGGER: user asks to compute S-parameters, analyze insertion/return loss, extract fields or currents, compare MoM vs FEM, or control mesh for any RF PCB component. Invoke BEFORE writing sparameters() or solver code — API is non-obvious. SKIP: designing or creating components (use the specific matlab-design-pcb-* skill), material/stackup setup only (use matlab-manage-pcb-material), optimization sweeps (use matlab-optimize-pcb-design), PDN/IR-drop analysis (use matlab-analyze-pcb-pdn).

Enumerate SMB, WinRM, LDAP, and MSSQL services, validate credentials, spray passwords, and execute commands on remote hosts using NetExec during authorized penetration tests.

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.

Model, simulate, and optimize Serializer/Deserializer (SerDes) systems — serial and parallel links — using MATLAB SerDes Toolbox. Design NRZ and PAM-N links (PAM3 through PAM16) — explore equalization architectures (FFE, CTLE, DFE), sweep or optimize parameters with genetic algorithms, and characterize channels from loss models, S-parameter files, or crosstalk scenarios. Process captured waveforms through equalization chains, build eye diagrams, and decompose jitter. Deliver IBIS-AMI models for Tx, Rx, Redriver, or Retimer by exporting to Simulink and compiling .ami/.ibs/.dll/.so files. Covers the full arc from initial design exploration and parameter optimization to compliance testing and compiled model validation, including custom datapath blocks for nonstandard equalization.

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.

Cascade PCB components, add lumped elements, export Touchstone, and bridge to eye diagram or antenna array workflows. TRIGGER: user asks to cascade or connect multiple RF PCB components, add lumped R/L/C, export S-parameters to Touchstone, or combine PCB elements into a circuit. Invoke BEFORE writing pcbcascade or circuit code — cascade rules and port matching are non-obvious. SKIP: designing individual components (use the specific matlab-design-pcb-* skill), EM analysis of a single component (use matlab-analyze-em), material/stackup setup only (use matlab-manage-pcb-material), optimization (use matlab-optimize-pcb-design).

Econometrics skill for Synthetic Control Method (SCM). Activates when the user asks about: "synthetic control", "SCM", "synthetic counterfactual", "donor pool", "placebo test", "in-space placebo", "in-time placebo", "MSPE ratio", "Abadie Diamond Hainmueller", "augmented synthetic control", "penalized SCM", "synthetic DID", "合成控制", "合成控制法", "捐助池", "安慰剂检验", "合成反事实", "合成DID", "政策评估"

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.

Generates and analyzes proteins using ESM3 and ESM C language models, covering sequence generation, structure prediction, inverse folding, embeddings, and function conditioning with local or cloud-based Forge API inference.

vgademo - Sizecoded Demoscene Asm Generator

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.

Expert guidance for distributed training with DeepSpeed - ZeRO optimization stages, pipeline parallelism, FP16/BF16/FP8, 1-bit Adam, sparse attention

>- Run automatic SPICE simulations on subcircuits detected from KiCad schematic analysis — validates filter frequencies, divider ratios, opamp gains, LC resonance, and crystal load capacitance. Supports ngspice, LTspice, and Xyce (auto-detected). Generates testbenches, runs batch mode, produces structured pass/warn/fail report. Use when the user asks to simulate, verify, or validate any analog subcircuit — RC filters, LC filters, voltage dividers, opamp circuits, crystal oscillators. Also for "simulate my circuit", "run spice", "verify with simulation", "check my filter cutoff", "does this divider give the right voltage", "what's the bandwidth of this opamp stage". Consider suggesting simulation during design reviews when the schematic analyzer reports simulatable subcircuits and a SPICE simulator is available.

Deploy, inspect, log-tail, snapshot, and troubleshoot AEM Rapid Development Environments using the Adobe I/O CLI plugin.

Set up the Holoscan Sensor Bridge demo environment end-to-end: clone the repo, configure the host per platform, build and run the demo container, and verify connectivity to the sensor board.

Fine-tune, evaluate, run inference, and export Cosmos-Embed1 video-text embedding models for tasks like text-to-video retrieval and semantic deduplication.

Optimizes hot-path scalar loops in .NET 8+ with cross-platform Vector128/Vector256/Vector512 SIMD intrinsics, or replaces manual math loops with single TensorPrimitives API calls.

Senior embedded software engineer specializing in firmware and driver development for ARM Cortex-M microcontrollers (Teensy, STM32, nRF52, SAMD). Decades of experience writing reliable, optimized, and maintainable embedded code with deep expertise in memory barriers, DMA/cache coherency, interrupt-driven I/O, and peripheral drivers.

Audit Kubernetes cluster security posture against CIS benchmarks using kube-bench with automated checks for control plane, worker nodes, and RBAC.

Run ESM protein language models — ESM3 for generative multimodal protein design across sequence, structure, and function, and ESM C for efficient embeddings and representations — locally or via the cloud Forge API. Use when working with protein sequences, structures, or function prediction, designing novel proteins, generating protein embeddings, performing inverse folding, or doing protein-engineering tasks. Part of the AlterLab Academic Skills suite.

Run CIS Kubernetes Benchmark checks and remediate findings with kube-bench.

Layer 0 of the keyword research pipeline. Builds a topic-graph snapshot for the brand's category before any seed work, approximated from Semrush phrase_related + phrase_questions on the category seeds plus the brand's own ranking footprint (domain_organic_unique). Idempotent on brand-config hash; never blocks the pipeline; cheap.

Machine learning on genomic interval data (BED files) with the geniml Python package — region embeddings (Region2Vec), joint region+metadata embeddings (BEDspace/StarSpace), single-cell ATAC-seq embeddings (scEmbed), consensus peak sets / universes (build-universe), tokenization, BEDshift randomization, and BBClient/BEDbase caching. Use when training or using region/cell embeddings, clustering scATAC-seq, building a tokenization universe from BED collections, or any ML/feature-learning task over genomic regions. NOT for plain interval arithmetic (overlap/intersect/merge counts) — that is gtars, not geniml. Part of the AlterLab Academic Skills suite.

Exploit Kerberos Constrained Delegation misconfigurations in Active Directory to impersonate privileged users via S4U2self and S4U2proxy extensions for lateral movement and privilege escalation.

Econometrics skill for Synthetic Control Method (SCM). Activates when the user asks about "synthetic control", "SCM", "placebo test", "synthetic DID", "合成控制", "安慰剂检验", "合成反事实", "合成DID".

Worktree-first dev environment manager for issues, PRs, and features with optional tmux sessions

编写、修改、审查 .cnb.yml 流水线配置，诊断构建失败原因并优化性能。