Results for “scientific-diagrams”

Provides guides for creating diagrams and visualizations using Mermaid, Excalidraw, PlantUML, TikZ, and other tools, covering flowcharts, architecture diagrams, and scientific illustrations.

Build visually engaging scientific slide decks for conferences, seminars, defenses, and research talks with structured planning, design templates, and automated image generation.

Generate technical architecture diagrams, pipeline flows, layer/stack diagrams, and system illustrations as standalone HTML files. Uses a dark-mode design system with embedded CSS and inline SVG. Use when the user needs architecture diagrams, system illustrations, flow charts, or technical visualizations.

Create professional, dark-themed SVG diagrams of any type — architecture, flowcharts, sequence, structural, mind maps, timelines, and more.

Create publication-ready scientific figures with multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and journal-specific formatting using matplotlib, seaborn, and plotly.

Create professional, dark-themed SVG diagrams of any type — architecture diagrams, flowcharts, sequence diagrams, structural diagrams, mind maps, timelines, illustrative/conceptual diagrams, and more. Use this skill whenever the user asks for any kind of technical or conceptual diagram, visualization of a system, process flow, data flow, component relationship, network topology, decision tree, org chart, state machine, or any visual representation of structure/logic/process. Also trigger when the user says "画个图" "画一个架构图" "diagram" "flowchart" "sequence diagram" "draw me a ..." or uploads content and asks to visualize it. Output is always a standalone .svg file.

Generate Mermaid diagrams from user requirements. Saves .mmd and .md files to figures/ directory with syntax verification. Supports flowcharts, sequence diagrams, class diagrams, ER diagrams, Gantt charts, and 18 more diagram types.

Discovers and uses scientific datasets, models, blog posts, and interactive demos from a curated catalog for AI/ML work in domains like biology, chemistry, physics, and genomics.

Create SVG/HTML or Excalidraw diagrams for concepts, architecture, flows, and whiteboards.

Dark-themed SVG architecture/cloud/infra diagrams as HTML.

Generate Excalidraw diagrams from natural language descriptions, supporting flowcharts, relationship diagrams, mind maps, architecture diagrams, and more. Outputs .excalidraw JSON files that can be opened directly in Excalidraw.

Extracts protocol message flow from source code, RFCs, academic papers, pseudocode, or formal models (ProVerif/Tamarin) and generates Mermaid sequence diagrams with cryptographic annotations.

Evaluate scientific claims and evidence quality by assessing experimental design, identifying biases and confounders, and applying evidence grading frameworks like GRADE and Cochrane Risk of Bias.

Creates hand-drawn wireframes with graph-paper background, multiple tabs, scribbled chart placeholders, hatched fills, and sticky-note annotations.

Generates diagrams and visuals from code or descriptions, routing to specialized tools for hand-drawn, formal, academic, or architectural output.

Comprehensive guide for creating software diagrams using Mermaid syntax. Use when users need to create, visualize, or document software through diagrams including class diagrams (domain modeling, object-oriented design), sequence diagrams (application flows, API interactions, code execution), flowcharts (processes, algorithms, user journeys), entity relationship diagrams (database schemas), C4 architecture diagrams (system context, containers, components), state diagrams, git graphs, pie charts, gantt charts, or any other diagram type. Triggers include requests to "diagram", "visualize", "model", "map out", "show the flow", or when explaining system architecture, database design, code structure, or user/application flows.

Create process and architecture diagrams using Mermaid.js syntax

Provides nine skills for Nature-journal-family academic publishing, covering figure creation, prose polishing, manuscript writing, citation formatting, data availability statements, paper reading, reviewer responses, paper-to-PPT conversion, and academic search via an MCP server.

Builds statistical plots with the seaborn Python library and pandas DataFrame integration, on attractive matplotlib-based defaults. Use for quick exploration of distributions, relationships, and categorical comparisons — box plots, violin plots, swarm/strip plots, KDE/histograms, pair plots, joint plots, regression plots, correlation heatmaps, and faceted small multiples (relplot/displot/catplot/lmplot). For interactive/hover/zoom charts defer to alterlab-plotly; for exact journal/manuscript styling (column widths, point fonts, CMYK, vector export) defer to alterlab-scientific-viz; for low-level custom matplotlib figures defer to alterlab-matplotlib (seaborn integrates with it for fine-tuning). Part of the AlterLab Academic Skills suite.

Automates the preparation of Easy difficulty diagram specifications from a CSV report and chapter files, generating reports, execution plans, and spec files for MicroSim generation.

Write scientific manuscripts in full paragraphs using IMRAD structure, with citations (APA/AMA/Vancouver), figures/tables, and reporting guidelines (CONSORT/STROBE/PRISMA) for research papers and journal submissions.

Organize qualitative research data into an affinity diagram with themes, clusters, and insight statements.

Exploratory data analysis (EDA) on a scientific data file — auto-detects the format, runs structure/quality/statistics checks, and writes a markdown EDA report with downstream recommendations. Use when asked to "explore", "analyze", "summarize", "profile", or "QC" a data file, or to understand its structure/content/quality before deciding what analysis to run. Covers tabular (.csv .tsv .xlsx .parquet), arrays (.npy .npz .hdf5 .h5 .mat .fits), sequence/genomics (.fasta .fastq .sam .bam .vcf .bed .gff .gtf .h5ad), microscopy (.tif .nd2 .czi .lif .ims .dcm .nii), spectroscopy/MS (.mzML .mzXML .mgf .fid .jdx), chemistry (.pdb .cif .mol .sdf .xyz .gro), and proteomics/metabolomics (.pepXML .mzid .mzTab). For zero-shot forecasting of a series use alterlab-timesfm; to create/configure a chunked cloud array store use alterlab-zarr. Part of the AlterLab Academic Skills suite.

Create publication-quality statistical graphics from tabular datasets with minimal code, supporting multivariate analysis, statistical estimation, and complex multi-panel figures.

Creates safety alert decks with hazard stripes, tiered cards, and policy code blocks for incident reviews and risk communication.

Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, auto-selects chart type and generates data-driven figures via matplotlib/seaborn. Use when creating any figure for a conference paper.

Comprehensive guide for creating software diagrams using Mermaid syntax. Use when users need to create, visualize, or document software through diagrams including class diagrams (domain modeling, object-oriented design), sequence diagrams (application flows, API interactions, code execution), flowcharts (processes, algorithms, user journeys), entity relationship diagrams (database schemas), C4 architecture diagrams (system context, containers, components), state diagrams, git graphs, pie charts, gantt charts, or any other diagram type. Triggers include requests to "diagram", "visualize", "model", "map out", "show the flow", or when explaining system architecture, database design, code structure, or user/application flows.

Design clear, accessible data visualizations with appropriate chart selection and styling.

Expert in physical and human geography, climate systems, cartography, and spatial analysis — builds geographically coherent worlds where terrain, climate, resources, and settlement patterns make scientific sense

Creates data-driven infographics and charts as accessible SVG. Use when visualizing data, choosing a chart type, generating an SVG chart or infographic, or reviewing a visualization for clarity and accuracy.

Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and LaTeX Beamer.

Generate clean, minimal technical SVG diagrams in a consistent Cloudflare-inspired style. Use when creating architecture diagrams, flow diagrams, or component diagrams for blog posts and documentation.