Results for “scverse”

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.

Generate Python SDK setup, CRUD, bulk, and paging snippets for Microsoft Dataverse using official patterns.

Analyze RNA velocity in single-cell RNA-seq data with scVelo, estimating cell state transitions from unspliced/spliced mRNA dynamics, inferring trajectory directions, computing latent time, and identifying driver genes.

Configure and execute authenticated vulnerability scans using OpenVAS/Greenbone Vulnerability Management with SSH and SMB credentials for comprehensive host-level assessment.

Estimate cell state transitions from unspliced/spliced mRNA dynamics using scVelo, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data.

RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory inference.

Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use when creating or wrangling .h5ad/zarr files, managing cell and gene annotations, concatenating batches, or handling layers/obsm/backed-mode; for the QC, normalization, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for RNA velocity from spliced/unspliced layers prefer alterlab-scvelo instead. Part of the AlterLab Academic Skills suite.

Generate production-ready Dataverse SDK solutions with architecture recommendations, data models, and implementation code for common business use cases.

Routes Azure VM and Virtual Machine Scale Set (VMSS) requests to the right workflow for recommendation, creation, troubleshooting, capacity reservation, and essential machine management.

Create and validate Earth2Studio data source wrappers (DataSource, ForecastSource, DataFrameSource, ForecastFrameSource) from remote stores like S3, GCS, Azure, HTTP, or HuggingFace.

Routes Omniverse Realtime Viewer requests to focused reference documents and enforces architectural rules for building USD viewer applications.

Generate production-ready Python code using the Dataverse SDK with error handling, retry logic, OData optimization, and logging.

Generate production-ready Python code for Dataverse SDK with advanced patterns including error handling, batch operations, OData optimization, and Pandas integration.

Audits trending open-source repos for exploitable vulnerabilities using Semgrep, TruffleHog, osv-scanner, and Slither, then routes findings to responsible disclosure channels (PVR for code flaws, public PRs for dependency CVEs).

Operates Scaleway cloud resources through the scw CLI, covering instances, images, object storage, Kubernetes, and databases.

Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory direction, compute latent time, and identify driver genes. Use when adding directionality to trajectories or studying differentiation dynamics from spliced/unspliced layers (velocyto/STARsolo output); for the general QC, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for .h5ad data-structure I/O and layer wrangling prefer alterlab-anndata instead. Part of the AlterLab Academic Skills suite.

Svelte 5 - Reactive UI framework with compiler magic, Runes API, SvelteKit full-stack framework, SSR/SSG, minimal JavaScript

Data Version Control for ML projects. Track large datasets and models alongside Git, build reproducible ML pipelines, and run experiments with metric comparison. Works with any storage backend including S3, GCS, Azure, and local filesystems.

Provides a complete deep-dive into Cross-Site Scripting (XSS) with exact payloads and bypass techniques for every PortSwigger lab variant, from apprentice to expert level.

Scan container images for known vulnerabilities using Anchore Grype with SBOM-based matching and configurable severity thresholds.

You are an expert in SWC, the Rust-based JavaScript/TypeScript compiler. You help developers replace Babel and Terser with SWC for 20-70x faster compilation, minification, and bundling — used by Next.js, Vite, Parcel, and Deno as their default compiler, handling TypeScript stripping, JSX transformation, polyfill injection, and code minification at native speed.

Server-Sent Events for real-time server-to-client streaming. Express, Fastify, FastAPI, Spring WebFlux SSE implementations. Event streams, reconnection, and EventSource API. USE WHEN: user mentions "SSE", "Server-Sent Events", "EventSource", "event stream", "text/event-stream", "live feed", "streaming updates" DO NOT USE FOR: bidirectional communication - use `socket-io`; WebRTC - use `webrtc`; LLM streaming - use AI SDK skills

Plan and implement new features, screens, managers, and systems in QuizVerse.

Triage and prioritize vulnerabilities using CISA's Stakeholder-Specific Vulnerability Categorization (SSVC) decision tree framework to produce actionable remediation priorities.

Server-Side Rendering configuration and best practices for Naive UI. Invoke when user needs to implement SSR with Naive UI in Nuxt.js, Vitepress, Vite SSG/SSE, or Webpack environments.

Spatial region-aware cell matching for CODEX/scRNAseq integration

Swift language fundamentals (5.10+ / 6.x). Covers optionals, value vs reference semantics, protocols & generics, Swift Concurrency (async/await, actors, Sendable, structured tasks), Result Builders, and Apple platform interop. USE WHEN: user mentions "Swift", "SwiftUI", "async/await Swift", "actor", "Sendable", "Codable", "Combine", "Result Builder", "Apple Keychain", "Secure Enclave", "iOS native" DO NOT USE FOR: SwiftUI screen layouts in depth - use SwiftUI-specific skill if exists DO NOT USE FOR: Compose iOS via Skia - use `frontend-frameworks/compose-multiplatform` DO NOT USE FOR: Kotlin/Native ↔ Swift bridging - use `languages/uniffi`

Scan container images, IaC, and SBOMs for vulnerabilities and misconfigurations in CI/CD with Trivy.

Scaffold, install, and compose shadcn-vue components built on Reka UI v2, including Vue variants, form patterns with vee-validate/Zod, and adaptation of existing components.

Work with AudioSource, VideoPlayer, audio quiz playback, AI voice, and media streaming in QuizVerse.

Bidirectional conversion between Clojure and Scala. Use when migrating projects between these languages in either direction. Extends meta-convert-dev with Clojure↔Scala specific patterns. Use when migrating Clojure projects to Scala, translating Clojure patterns to idiomatic Scala, or refactoring Clojure codebases. Extends meta-convert-dev with Clojure-to-Scala specific patterns.

Provides a structured 5-phase workflow for bug bounty and SRC vulnerability hunting, including 19 attack-type playbooks, 305 structured payloads, 263 WAF bypass variants, and 2,887 real HackerOne case studies.