Results for “snakemake”

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.

Creates SageMaker endpoints (real-time or async) with autoscaling, CloudWatch alarms, and tagging enabled by default, then smoke-tests them before declaring success.

Generates synthetic brain MRI volumes using NVIDIA's NV-Generate-CTMR workflow, with configurable modality and random seed.

Scaffolds new agent skills conforming to the Agent Skills specification and dotnet/skills repository conventions, generating SKILL.md files with proper frontmatter and directory structures.

Discovers, validates, or creates a SageMaker execution role before deploying or training, preventing IAM-related deployment failures.

Sentinel Validation & Project Promotion

Search existing local, marketplace, GitHub, and web skill sources before creating a new skill. Use when the user wants to create, build, fork, or find a skill for a workflow.

Searches local, marketplace, GitHub, and web sources for existing skills before creating a new one, and vets external matches for safety.

Searches local, marketplace, GitHub, and web sources for existing skills before creating a new one to avoid duplication.

Author a new processkit skill end-to-end — use-case interview, frontmatter, body sections, Gotchas, and trigger-phrase generation.

创建新 Skill 前先搜索已有的本地、市场、GitHub 及网络 Skill 资源——当用户要创建、构建、Fork 或查找工作流 Skill 时使用

Generate SKILL.md files with proper YAML frontmatter, capabilities documentation, and usage examples following Babysitter SDK conventions.

Snyk API skill. Use when working with Snyk for user, group, orgs. Covers 100 endpoints.

Scaffolds a new ClawBio skill from a JSON/YAML spec or interactively, generating SKILL.md, Python skeleton, tests, and updating the catalog.

任意のジャンル・テーマで曲＋歌詞を制作する汎用作曲エンジン。曲先（メロディ淘汰型）でキャッチーなサビメロディを複数生成→人間が選別→変奏淘汰で確定→歌詞を載せる、ヒット曲プロセス準拠。作曲・作詞に特化。MiniMax music-2.6 主軸。ユーザーが「曲作って」「作曲して」「音楽作って」「歌作って」「オリジナル曲作って」「新しい曲作って」「武将で曲作って」「サイバー和で曲作って」と言った時、または /make-song を呼んだ時にトリガー。テーマ修飾（武将/サイバー和）は Phase 0 の [THEME] 選択で対応。

SKILL.md — 硅基生命训练学·索引技能

You are an expert in Knex.js, the flexible SQL query builder for Node.js that supports PostgreSQL, MySQL, SQLite, and MSSQL. You help developers write type-safe queries with a chainable API, manage database migrations and seeds, build complex joins and subqueries, and use transactions — providing direct SQL control without the overhead of a full ORM.

Build cross-platform AI chat interfaces with Makepad using MolyKit, covering async patterns, BotClient integration, and chat widgets.

用于审计Claude技能和命令的质量。支持快速扫描（仅变更技能）和全面盘点模式，采用顺序子代理批量评估。

CRITICAL: Use for MolyKit AI chat toolkit. Triggers on: BotClient, OpenAI, SSE streaming, AI chat, molykit, PlatformSend, spawn(), ThreadToken, cross-platform async, Chat widget, Messages, PromptInput, Avatar, LLM

Generate typed SDK bindings (Pydantic v2 models, TypeScript types) from the Bloodbank JSON Schema tree at `bloodbank/schemas/bloodbank/v1/**` (Draft 2020-12). Uses `datamodel-code-generator` and `json-schema-to-typescript` — NOT the deprecated hand-rolled Holyfields generators. Use when generating event-contract bindings for a Bloodbank consumer, importing typed CloudEvents envelopes into another project, or scaffolding a `bloodbank-contracts` SDK package. Trigger keywords — "bloodbank SDK", "bloodbank contracts", "Pydantic from bloodbank schemas", "TypeScript types for bloodbank events", "bloodbank.v1.* types", "event contract bindings", "datamodel-code-generator", "json-schema-to-typescript", "regenerate SDK", "CloudEvents bindings". Do NOT use for schema authoring (edit `bloodbank/schemas/` directly per `docs/event-naming.md` §12), runtime envelope validation (use `BLOODBANK_HOOK_VALIDATE=1`), schema-tree consistency (`mise run smoketest:schemas`), or generic JSON Schema codegen unrelated to Bloodbank.

Svelte 5 - Reactive UI framework with compiler magic, Runes API, SvelteKit full-stack framework, SSR/SSG, minimal JavaScript

Guides users through creating new Synapse skills by extracting parameters, confirming details, and generating a JSON skill definition.

Create and edit AnimSequence keyframes and tracks — add/remove keyframes, set bone tracks, query sequence info, and bake edits (AnimSequenceService). Use when the user asks to create a new animation sequence, add keyframes/tracks, or edit raw animation data. For constraint-aware bone posing, also load animation-editing.

Build full-stack web applications with SvelteKit — file-based routing, SSR, SSG, API routes, and form actions in one framework.

Create, edit, audit, tidy, validate, or restructure AgentSkills and SKILL.md files.

SQLite-backed index over all entity files in the project. The read-side foundation for every other MCP server. Use whenever an agent needs to look up entities by ID, kind, state, or text — instead of grepping the filesystem.

CMake build system for C/C++ projects. Modern CMake (3.20+) with targets, properties, presets (CMakePresets.json), FetchContent, find_package, generator expressions, install rules, vcpkg/Conan integration. USE WHEN: user mentions "CMake", "CMakeLists.txt", "CMakePresets", "find_package", "FetchContent", "target_link_libraries", "vcpkg", "Conan", "C++ build" DO NOT USE FOR: Make, autotools, Bazel, Meson, Visual Studio .vcxproj direct editing

Heroku Slack Agents

Build cross-platform AI chat interfaces with Makepad using MolyKit, covering async patterns, chat widgets, and BotClient integration.

Analyze and manage GNU Make build systems: discover targets, inspect variables and dependencies, and debug build failures with dry runs and structured reports.

Scaffolds new agent skills for the dotnet/skills repository. Use when creating a new skill, generating SKILL.md files, or setting up skill directory structures. Handles frontmatter generation, section templates, and validation guidance.