Results for “treebank”

Generate typed SDK bindings (Pydantic v2 models, TypeScript types) from the Bloodbank JSON Schema tree at `bloodbank/schemas/bloodbank/v1/**` (Draft 2020-12). Uses `datamodel-code-generator` and `json-schema-to-typescript` — NOT the deprecated hand-rolled Holyfields generators. Use when generating event-contract bindings for a Bloodbank consumer, importing typed CloudEvents envelopes into another project, or scaffolding a `bloodbank-contracts` SDK package. Trigger keywords — "bloodbank SDK", "bloodbank contracts", "Pydantic from bloodbank schemas", "TypeScript types for bloodbank events", "bloodbank.v1.* types", "event contract bindings", "datamodel-code-generator", "json-schema-to-typescript", "regenerate SDK", "CloudEvents bindings". Do NOT use for schema authoring (edit `bloodbank/schemas/` directly per `docs/event-naming.md` §12), runtime envelope validation (use `BLOODBANK_HOOK_VALIDATE=1`), schema-tree consistency (`mise run smoketest:schemas`), or generic JSON Schema codegen unrelated to Bloodbank.

Manipulate phylogenetic trees, detect evolutionary events, integrate NCBI taxonomy, and create publication-quality visualizations using the ETE toolkit.

Orchestrate token-heavy research, coding, and testing by delegating bounded tasks to cheaper subagents while reserving Claude Fable for architecture, synthesis, and final review.

Builds and queries multi-language source code graphs for security analysis, including blast radius, taint propagation, privilege boundaries, and entry point enumeration.

Access and analyze drug information from the DrugBank database — drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. Use when working with pharmaceutical data, drug discovery research, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task needing detailed drug and drug-target records from DrugBank. Part of the AlterLab Academic Skills suite.

Streams change data capture events from a TigerBeetle financial transactions database into Redpanda or Kafka using the tigerbeetle_cdc input, with checkpointing, filtering, and routing guidance.

Scaffold a New DirectLake Semantic Model (TMDL) (preview)

Operate Redpanda through its Kafka-compatible API: produce and consume records, manage topics and consumer groups, run transactions, and configure tiered storage using rpk and Kafka clients.

Orchestrate cross-chain swaps, bridges, and DeFi yield deposits via the Sequence Trails API, with on-chain execution through Bankr.

Transaction-verified trading signals on Base. Register agent as signal provider, publish trades with TX hash proof, consume signals from top performers via REST API. All track records verified against blockchain data. No fake performance claims. Triggers on: "publish signal", "post trade signal", "register provider", "subscribe to signals", "copy trade", "bankr signals", "signal feed", "trading leaderboard", "read signals", "get top traders".

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.

Analyze Base EVM tokens via the deluagent oracle. Pass a contract address or cashtag to receive a flat decision header (action, conviction, entry/stop/size, read) and a full cognition report. Tiered x402 pricing with sequential calls required.

Runs NCBI BLAST+ 2.17.0 sequence searches from the command line: makeblastdb (with -parse_seqids), blastn/blastp/blastx/tblastn with tabular -outfmt 6/7 for parsing, correct -task choice (megablast vs blastn vs blastn-short), -taxids/-negative_taxids taxonomic scoping, and -mt_mode multithreading; plus a DIAMOND blastp --ultra-sensitive path for large protein searches. Warns that -max_target_seqs is a heuristic keep-count, not a top-N best-hits filter. Use when the user wants command-line BLAST, makeblastdb, a local BLAST database, blastn/blastp/blastx/tblastn searches, or DIAMOND protein search. For the Bio.Blast web NCBIWWW API prefer alterlab-biopython; for quick one-liner database lookups prefer alterlab-gget. Part of the AlterLab Academic Skills suite.

Query the Open Targets Platform GraphQL API for target-disease associations, tractability and safety data, genetics/omics evidence, and known drugs. Use when identifying or prioritizing therapeutic drug targets, assessing target druggability/safety, or gathering target-disease evidence for drug discovery. Part of the AlterLab Academic Skills suite.

Builds statistical plots with the seaborn Python library and pandas DataFrame integration, on attractive matplotlib-based defaults. Use for quick exploration of distributions, relationships, and categorical comparisons — box plots, violin plots, swarm/strip plots, KDE/histograms, pair plots, joint plots, regression plots, correlation heatmaps, and faceted small multiples (relplot/displot/catplot/lmplot). For interactive/hover/zoom charts defer to alterlab-plotly; for exact journal/manuscript styling (column widths, point fonts, CMYK, vector export) defer to alterlab-scientific-viz; for low-level custom matplotlib figures defer to alterlab-matplotlib (seaborn integrates with it for fine-tuning). Part of the AlterLab Academic Skills suite.

Searches UK Biobank's 12,000+ data fields and publications by natural language query, returning ranked field IDs and descriptions for research questions.

Train reinforcement learning agents using PPO, SAC, DQN, TD3, DDPG, and A2C algorithms with a scikit-learn-like API. Supports custom Gymnasium environments, vectorized environments, callbacks, and model persistence.

Enumerate and audit Active Directory forest trust relationships using impacket for SID filtering analysis, trust key extraction, cross-forest SID history abuse detection, and inter-realm Kerberos ticket assessment.

Run OpenClaw remote validation on Linux, macOS, or Windows via the Crabbox or Testbox wrapper, reporting the actual provider and lease id.

Search movies and TV shows, retrieve cast, ratings, streaming availability, and personalized recommendations via the TMDb API.

ClickHouse database patterns, query optimization, analytics, and data engineering best practices for high-performance analytical workloads.

调用generateTreeMind工具创建可视化思维导图，返回图片URL和编辑链接。适用于故事结构可视化、情节关系图谱展示

Enables agents to place pre-launch buy orders for Bankr tokens on Base and to launch new tokens with coordinated demand and distribution via the AutoBoy REST API.

Use the Crabbox wrapper for OpenClaw remote validation across Linux, macOS, Windows, and WSL2, including delegated Blacksmith Testbox proof. Report the actual provider and id.

Spark by Lightspark: statechain-derived L2 with FROST threshold signatures, leaf architecture, Lightning compatibility. Beta launched April 2025; managed by Spark Operators (SOs). USE WHEN: integrating with Spark, evaluating Spark vs Ark vs Lightning, designing leaf-based UTXO trees.

Manage biological datasets and models with LaminDB, an open-source lineage-native lakehouse. Covers setup, artifact registration, query/search, lineage tracking, validation, ontology-backed annotation, collections, branches, storage, and workflow integrations.

Create, inspect, and edit StateTree assets — states, tasks, transitions, conditions, considerations, and property bindings for AI behavior and game logic (StateTreeService). Use when the user asks to build a StateTree, add states/tasks/transitions, bind task properties, set up Utility AI considerations, or wire StateTree delegate transitions.

Rank a topic's user-flow branches by proof priority (value × risk × frequency) right after user-flow-map, ordering the branches, gating variation breadth, and promoting or pruning flows so state-model and ux-variations grow the tree in proof order — writes only existing flow-tree ordering fields, no schema change.

Expert guidance for architecting, developing, and operating SurrealDB 3, covering SurrealQL, multi-model data modeling, vector search, security, deployment, performance tuning, SDK integration, and ecosystem tools.

Query ChEMBL via the chembl_webresource_client Python client for curated bioactive molecules and drug-like compound libraries at scale — search compounds by structure or physicochemical properties, retrieve bioactivity measurements (IC50, Ki, EC50), and find inhibitors of a target. Use when screening chemical libraries, mining curated bioactivity for a protein, running SAR studies, or sourcing medicinal-chemistry data; for measured protein-ligand binding affinities (Ki/Kd/IC50) prefer alterlab-bindingdb instead. Part of the AlterLab Academic Skills suite.

Diagnoses Redpanda broker and cluster health using debug bundles, metrics endpoints, logs, CPU profiling, and partition/raft checks, with triage playbooks for common failure modes.

ClickHouse数据库模式、查询优化、分析以及高性能分析工作负载的数据工程最佳实践。

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Collect local and remote Redpanda diagnostics bundles and inspect broker process info using the `rpk debug` command group, including triaging enterprise features from captured logs, metrics, and profiles.

Build, deploy, and manage Redpanda Data Transforms, WebAssembly functions that run inside the broker to transform records from an input topic to one or more output topics. Use when writing or deploying a transform in Go (TinyGo), Rust, JavaScript, or TypeScript; using `rpk transform.