Alphafold Predictor

AlphaFold protein structure prediction skill with confidence assessment and model analysis

a5c-ai Updated 1.7k repo stars

File contents

AlphaFold Predictor Skill

Purpose

Enable AlphaFold protein structure prediction with confidence assessment and model analysis.

Capabilities

  • Structure prediction execution
  • pLDDT confidence scoring
  • PAE analysis
  • Multi-chain complex prediction
  • Template-based refinement
  • ColabFold integration

Usage Guidelines

  • Review pLDDT scores for prediction confidence
  • Analyze PAE for domain boundaries
  • Predict complexes for multi-protein assemblies
  • Use templates when homologs exist
  • Validate predictions against experimental data
  • Document model versions and parameters

Dependencies

  • AlphaFold2
  • ColabFold
  • RoseTTAFold

Process Integration

  • Protein Structure Prediction (protein-structure-prediction)
  • Molecular Docking and Virtual Screening (molecular-docking)

a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/alphafold-predictor commit 927e5a31c8

Frequently asked questions

npx skillmds@latest add a5c-ai/alphafold-predictor