a5c-ai IGV Genome Browser Skill
Purpose
Enable IGV integration for interactive genome visualization and review.
Capabilities
- BAM/VCF/BED visualization
- Batch screenshot generation
- Session management
- Track customization
- Region navigation
- Multi-sample comparison
Usage Guidelines
- Load appropriate reference genome
- Configure tracks for analysis needs
- Generate batch screenshots for reports
- Save sessions for reproducibility
- Navigate to regions of interest
- Compare multiple samples visually
Dependencies
- IGV
- IGV.js
- JBrowse2
Process Integration
- Clinical Variant Interpretation (clinical-variant-interpretation)
- Tumor Molecular Profiling (tumor-molecular-profiling)
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)