advaitpaliwal OpenFold3
Use this skill for OpenFold-family structure prediction or comparison.
Workflow:
- Normalize FASTA, chains, templates, MSAs, ligands or partners, seeds, and expected output format.
- Verify model code, checkpoints, databases, and GPU route before running.
- Save the input manifest, environment lockfile, command, logs, structure outputs, confidence files, and runtime metadata.
- Compare against AlphaFold-style, ESMFold-style, PDB, or literature evidence when the result affects a decision.
- Report reproducibility gaps such as missing databases, unavailable weights, failed templates, or route-specific approximations.
Do not present an OpenFold-family output without version and input provenance.