Alim430 BioResearch Agent — Environment & Reproducibility Check
Capability
Validates that the framework is correctly installed and runnable, and that the reproducibility preconditions (dependencies, network, writable outputs) are met. This is the prerequisite skill before any literature / biomarker / causal workflow.
Run
bioresearch doctor
The check validates:
- Python version (3.9+)
- Required dependencies (pandas, numpy, scipy, matplotlib, requests, networkx)
- Demo input files present
- Network connectivity to public biomedical APIs
- Output-directory write permissions
Outputs
Console report only — no data files. Exit code 0 means ready; non-zero means a precondition
failed and should be fixed before running workflows.
Note
Skills are thin invocation wrappers. This skill dispatches to the framework's doctor command;
it makes no network calls itself.