BioResearch Agent — Framework Introduction
What this skill is
A reference skill that explains the BioResearch Agent Framework's capabilities. It adds no analysis of its own — it only describes what the framework can do and points to the right workflow skill.
Capabilities at a glance
| Capability | Workflow | Entry point |
|---|---|---|
| Literature review + knowledge graph | literature |
bioresearch run literature --query "..." |
| Biomarker discovery (DEG + enrichment) | biomarker |
bioresearch run biomarker --disease "..." |
| Differential expression (DEG) | biomarker |
bioresearch run biomarker --disease "..." |
| Pathway / GO / KEGG enrichment | biomarker |
bioresearch run biomarker --disease "..." |
| Mendelian randomization (MR) | causal |
bioresearch run causal --exposure X --outcome Y |
| Environment / reproducibility check | doctor |
bioresearch doctor |
Run
No computation. This skill informs; the actual work is done by the workflow skills
(bioresearch-literature-analysis, bioresearch-biomarker-discovery,
bioresearch-differential-expression, bioresearch-pathway-enrichment,
bioresearch-causal-inference, bioresearch-environment-check).
Honesty note
BioResearch Agent executes reproducible workflows (t-test + Bonferroni, hypergeometric enrichment, IVW-MR) by dispatching to existing domain libraries. It does not reason about biology and does not discover novel science on its own.