Update Target Projects

Update Target Projects

Discover and sync all toolkit-using projects, the Codex CLI skill pack, and global Conductor skill symlinks with the latest skills. Skill policy is global-only: local/mixed project skill copies are treated as legacy states to migrate.

Trigger

Use this skill when:

• The post-commit hook reminds you to sync after skill changes
• You want to batch-sync multiple projects at once
• You need to check which projects are out of date
• You want to update the Codex CLI skill pack
• You want to verify global skill symlinks for Conductor autocomplete
• You want to sync curated skills to the public skills repo

Configuration

Codex skill pack location:

1. $CODEX_HOME/skills if CODEX_HOME is set
2. ~/.codex/skills (default)

Project search paths:

1. $TOOLKIT_SEARCH_PATH environment variable (colon-separated paths)
2. ~/Projects (default)

Search depth: 4 levels (finds ~/Projects/*/, ~/Projects/*/*/, and ~/Projects/*/*/*/)

Global skills location: ~/.claude/skills/ (symlinks for Conductor autocomplete)

Public skills repo (optional, .claude/public-skills-config.json):

{
  "enabled": true,
  "path": "/path/to/awesome-claude-skills"
}

Public skills manifest: .claude/public-skills-manifest.json (lists curated skills to publish)

Workflow

Copy this checklist and track progress:

Update Target Projects Progress:
- [ ] Phase 1: Discover projects with toolkit-version.json
- [ ] Phase 1b: Check Codex CLI skill pack status
- [ ] Phase 1c: Check global skill symlinks (Conductor autocomplete)
- [ ] Phase 1d: Detect orphaned skills (removed from toolkit)
- [ ] Phase 1e: Check workstream scripts status
- [ ] Phase 1f: Check skill resolution mode for each project
- [ ] Phase 1g: Check public skills repo status (if configured)
- [ ] Phase 2: Detect activity status for each project
- [ ] Phase 3: Check sync status (OUTDATED vs CURRENT)
- [ ] Phase 4: Display status report (including orphans, global status, and resolution)
- [ ] Phase 5: User selection (what to sync)
- [ ] Phase 6a: Sync Codex skill pack (if selected) — includes deletions
- [ ] Phase 6b: Sync global skill symlinks (if selected)
- [ ] Phase 6c: Sync target projects (if selected) — includes deletions
- [ ] Phase 6d: Sync workstream scripts (if selected)
- [ ] Phase 6g: Sync Codex App setup wrapper (if selected)
- [ ] Phase 6e: Migrate legacy local/mixed projects to global skills (if selected)
- [ ] Phase 6h: Sync public skills repo (if selected)
- [ ] Phase 7: Generate summary report

Phase 1: Discover Projects

See PROJECT_SYNC.md for detailed discovery and sync logic.

1. Find all toolkit-version.json files in search paths
2. Read each file and verify toolkit_location matches
3. Extract toolkit_commit and last_sync timestamps

Phase 1b: Check Codex CLI Skill Pack

See CODEX_SYNC.md for detailed Codex sync logic.

1. Discover skills dynamically from toolkit
2. Classify each skill: MISSING, SYMLINK_CURRENT, COPY_OUTDATED, etc.
3. Determine overall Codex status

Phase 1c: Check Global Skill Symlinks

See GLOBAL_SYNC.md for detailed global sync logic.

1. Scan ~/.claude/skills/ for existing entries
2. Classify each: SYMLINK_CURRENT, MISSING, SYMLINK_OTHER, REAL_DIR
3. Detect orphaned symlinks (pointing to deleted toolkit skills)
4. Determine overall global status

Phase 1e: Check Workstream Scripts Status

Detect .workstream/ scripts in target projects and compare file hashes with toolkit:

1. Check if target has .workstream/ directory
2. For each script (lib.sh, setup.sh, dev.sh, verify.sh, README.md):
   • Compare SHA256 hash with toolkit version
   • Classify: MISSING, CURRENT, OUTDATED
3. Check workstream.json.example separately (it's a reference, not a project file)
4. Track status in toolkit-version.json under a "workstream" key

Status determination:

• MISSING — no .workstream/ directory in target
• CURRENT — all script hashes match toolkit
• OUTDATED — one or more scripts differ from toolkit

Phase 1f: Check Skill Resolution Mode

For each target project, determine current skill resolution state:

See GLOBAL_SYNC.md for the full check_project_resolution() implementation.

Summary: reads skill_resolution and force_local_skills from toolkit-version.json, counts local skill directories, checks global symlink health via all_skills_globally_usable(), and returns one of the resolution states below.

Phase 1g: Check Public Skills Repo

See PUBLIC_REPO_SYNC.md for detailed public repo sync logic.

1. Read config from .claude/public-skills-config.json
2. If not configured or enabled is false, skip with status NOT CONFIGURED
3. Run pre-flight checks (path exists, is git repo, clean working tree)
4. Read .claude/public-skills-manifest.json for the list of curated skills
5. Validate all skill names match ^[a-z0-9-]+$
6. Classify each skill: MISSING, CURRENT, OUTDATED, LOCAL_MODIFIED, UNMANAGED_PRESENT

Phase 1d: Detect Orphaned Skills

Identify skills that exist in targets but have been removed from toolkit:

1. Compare installed skills against current toolkit skills
2. Mark as ORPHANED if skill directory no longer exists in toolkit
3. Check if orphaned skills have local modifications

See CODEX_SYNC.md and PROJECT_SYNC.md for orphan detection logic.

Phase 2-3: Activity and Sync Status

For each project:

• Classify activity: ACTIVE (uncommitted), RECENT (modified <24h), DORMANT
• Check if sync needed by comparing commits

Phase 4: Display Status Report

TOOLKIT SYNC STATUS
===================
Toolkit: /path/to/toolkit
Current: abc1234 (2026-01-23)

GLOBAL SKILLS (Conductor Autocomplete)
───────────────────────────────────────
Location: ~/.claude/skills
Status:   CURRENT (30 symlinks active)

CODEX CLI SKILL PACK
────────────────────
Location: ~/.codex/skills
Status:   {status summary}

PUBLIC SKILLS REPO
──────────────────
Location: {path or "NOT CONFIGURED"}
Status:   {READY|NOT CONFIGURED|DIRTY|NOT A GIT REPO}
{If READY, show per-skill status table}

TARGET PROJECTS
───────────────
  #  Project          Sync Status   Resolution    Migration   Activity
  ─────────────────────────────────────────────────────────────────────
  1  ~/Projects/app   OUTDATED      legacy-local ✓ (30 dirs) DORMANT
  2  ~/Projects/api   CURRENT       global       —           RECENT
  3  ~/Projects/lib   CURRENT       legacy-local ⚠️ 2 modified ACTIVE

Resolution column values:

• global — Skills resolve via ~/.claude/skills/ symlinks
• legacy-local — Project still has local shadow copies that should be removed

Migration column values:

• ✓ (N dirs) — Can adopt global resolution (N skill directories to remove)
• ⚠️ N modified — Can adopt, but N skills have local modifications
• — — Already using global resolution (or not applicable)

Phase 5: User Selection

Prompt with options:

1. Sync everything (Recommended) — includes global migration for legacy local/mixed projects and public skills repo if configured
2. Global skill symlinks only
3. Codex skill pack only
4. Target projects only
5. Select specific items
6. Include ACTIVE projects too
7. Skip for now
8. Migrate legacy local/mixed projects to global skills
9. Public skills repo only (visible only if enabled in .claude/public-skills-config.json)

Option 8 visibility: Only show if at least one project is LEGACY_LOCAL (has local copies and global symlinks are healthy).

Phase 6: Execute Sync

6a: Codex Sync — See CODEX_SYNC.md 6b: Global Skills Sync — See GLOBAL_SYNC.md 6c: Project Sync — See PROJECT_SYNC.md

Global-only default: When running option 1, treat LEGACY_LOCAL projects as "sync + migrate to global" unless the user explicitly opts out. This prevents local shadow copies from persisting indefinitely.

6d: Workstream Scripts Sync — Copy .workstream/*.sh, README.md, and workstream.json.example to target projects:

1. For each target project selected for sync:
   • Create .workstream/ directory if missing
   • Copy scripts: lib.sh, setup.sh, dev.sh, verify.sh
   • Copy documentation: README.md, workstream.json.example
   • Run chmod +x .workstream/*.sh
   • Verify with ls -la .workstream/*.sh that scripts exist and have executable permissions.
2. Compare hashes before copying — skip if CURRENT
3. Update toolkit-version.json "workstream" key with new hashes. Read back the file to confirm valid JSON.
4. Do NOT copy or overwrite workstream.json (project-owned config)

6g: Codex App Setup Wrapper Sync — Copy .codex/setup.sh to target projects:

1. For each target project selected for sync:
   • Create .codex/ directory if missing
   • Copy setup.sh from toolkit .codex/setup.sh
   • Run chmod +x .codex/setup.sh
   • Verify with ls -la .codex/setup.sh that the file exists and is executable.
2. Compare hashes before copying — skip if CURRENT
3. Do NOT overwrite .codex/environments/ or other Codex App config (project-owned)

6e: Migrate Legacy Local Skills — Migrate from local/mixed to global resolution:

See GLOBAL_SYNC.md for state model and helper definitions.

Pre-flight checks:

1. Verify global health: all_skills_globally_usable() must return true
2. If unhealthy: abort with message "Global symlinks not healthy. Run sync first (option 1)."

For each selected project:

1. Detect modified local skills — skills where current hash != stored hash. See GLOBAL_SYNC.md for the full find_modified_skills() implementation. It compares each skill's current SHA-256 hash against the stored hash in toolkit-version.json and returns the list of skill names that differ.

2. Show migration preview:

   ADOPT GLOBAL SKILLS: ~/Projects/app
   ────────────────────────────────────
   Will remove:     30 skill directories
   Modified skills: 2 (will be backed up)
   After migration: Skills resolve via ~/.claude/skills/
   
   ⚠️  This project will no longer contain .claude/skills/.
       Collaborators without ~/.claude/skills/ will lose access.
   
   Proceed? [y/N]
   

3. If user confirms:

   • Back up modified skills to .claude/skills.bak/{skill}/ (if any)
   • Verify with ls .claude/skills.bak/ that backups were created before proceeding with deletion.
   • Delete local skill directories:

     # Note: glob must be OUTSIDE quotes to expand
     if [[ -d "$project_path/.claude/skills" ]]; then
       rm -rf "$project_path/.claude/skills/"*/
     fi
     

   • Verify with ls "$project_path/.claude/skills/" that skill directories were removed.
   • Update toolkit-version.json:
     • Set "skill_resolution": "global"
     • Set each file's "resolution": "global"
   • Read back toolkit-version.json to confirm valid JSON and that skill_resolution is "global".
   • DO NOT use git rm — let user review and commit

4. Report:

   ✓ Migrated ~/Projects/app to global skill resolution
     Removed: 30 skill directories
     Backed up: 2 modified skills → .claude/skills.bak/
     Skills now resolve via: ~/.claude/skills/
   

6f: Legacy Local Reversion (Deprecated)

Do not offer or execute a "revert to local" flow in normal operation. If a user explicitly demands local copies, treat it as a one-off exception and warn that it diverges from toolkit global-only policy.

Phase 6h: Sync Public Skills Repo

See PUBLIC_REPO_SYNC.md for detailed sync logic.

1. Read manifest from .claude/public-skills-manifest.json
2. For each skill in the manifest:
   • If MISSING or OUTDATED: wipe destination, cp -r from toolkit, remove .DS_Store files
   • If LOCAL_MODIFIED or UNMANAGED_PRESENT: warn and prompt before overwriting
   • If CURRENT: skip
3. Detect orphaned skills (tracked in toolkit-version.json but removed from manifest)
4. Update toolkit-version.json in public repo with new hashes
5. Stage managed paths: git -C "$path" add skills/ toolkit-version.json
6. Commit with sync summary
7. Prompt before push — never auto-push

Phase 7: Summary Report

SYNC COMPLETE
=============

Global Skills (Conductor Autocomplete):
  Symlinks created: 2
  Symlinks removed: 1 (orphaned)
  Symlinks repaired: 0
  Already current:  28

Codex CLI Skill Pack:
  Skills updated:  3
  Skills deleted:  1 (orphaned)
  Already current: 12

Target Projects:
  Projects processed: 4
    Synced:  2
    Skipped: 1 (active)
    Current: 1
  Skills deleted: 1 (orphaned)

Public Skills Repo:
  Skills synced:   3 (2 updated, 1 added)
  Skills removed:  0
  Already current: 6
  Skipped:         0 (local modifications)
  Committed:       yes
  Pushed:          no (user declined)

Resolution Changes:
  Migrated to global: 1 project (30 local dirs removed)
  Modified backed up: 2 skills → .claude/skills.bak/

Deleted Skills (removed from toolkit):
  - multi-model-verify

All synced items are now at toolkit commit abc1234

If projects were migrated:

MIGRATION SUMMARY
─────────────────
Projects migrated to global resolution:
  ✓ ~/Projects/app (30 skills)
  ✓ ~/Projects/api (30 skills)

These projects now use ~/.claude/skills/ symlinks.
Local skill copies have been removed.

Note: Collaborators need ~/.claude/skills/ symlinks to access skills.
Run this from their toolkit clone: /update-target-projects → option 2

Error Handling

Edge Cases

See EDGE_CASES.md for handling:

• Codex directory doesn't exist
• No projects found
• Project uses different toolkit
• Git not available
• Public skills repo not configured / missing path / dirty / local modifications
• Sync conflicts

REMINDER: Toolkit-managed projects should use global resolution. Local skill copies are legacy migration debt: back up modified local skills, remove local shadow copies, and keep toolkit-version.json aligned to "skill_resolution": "global".