Editing Clojure Files

Editing Clojure Files

Clojure code is a tree of forms, not lines of text. The unit of editing is the top-level form: ns, defn, def, (comment ...), etc. The structural editing tool clojure_edit_files understands this structure, auto-balances brackets via Parinfer, and returns post-edit diagnostics. Use clojure_edit_files whenever a structural edit is possible.

Delegation

Unless you have been specifically tasked with editing files yourself, always delegate file editing to a subagent. This protects the context window and isolates errors. Prefer the Clojure-editor subagent when available.

When delegating: Provide exact file paths, REPL-verified code with proper indentation, target line info, decision context, and explicit edit order instructions.

Code Shape for Tool Success

Structural editing tools operate on whole top-level forms — they read, transform, and rewrite the entire form in one pass. Smaller, simpler forms have higher success rates.

Thresholds

Code smells that break structural edits

1. Large Method — Over ~25 lines. Split at responsibility boundaries; use defn- helpers so each is an independently editable top-level form.
2. Deep Nested Complexity — 3+ levels of let/when/if/cond inside each other. Use threading macros (->, ->>) to flatten transformations. Extract inner bodies into named functions.
3. Bumpy Road — Alternating simple and complex sections in one function. Each bump is a misalignment point. One responsibility per function.
4. Complex Method — Many conditional branches in one function. Keep case/cond/condp branch bodies to one-liners or calls. Prefer data-driven dispatch (defmethod, maps of keyword → handler) over deep conditional trees.
5. Code Duplication — Repeated structure across functions. Extract once; each duplicate doubles the chance of structural mismatch during edits.

The refactor-first rule

When a function you need to modify already violates these thresholds, improve its structure first in a separate edit, verify the refactoring, then make the requested change. Structural edits on bloated forms are error-prone — the tool is fighting the shape of the code instead of focusing on the change.

The Tool: clojure_edit_files

One tool handles all structural editing operations. It accepts a batch of edits, validates them up front, groups by file, sorts for safe application order, and applies them sequentially.

Edit Types

Constraints

• At most one create per file per call
• At most one append per file per call
• All edits are schema-validated before any are applied — one invalid edit blocks the entire batch
• Within a file: creates run first, then replace/insert (highest line first), then appends
• Across files: files are processed sequentially

Usage Pattern

{
  "edits": [
    {"type": "replace", "filePath": "/path/to/file.clj", "line": 23, "targetLineText": "(defn process-data", "newForm": "(defn process-data\n  [items]\n  (map transform items))"},
    {"type": "insert", "filePath": "/path/to/file.clj", "line": 10, "targetLineText": "(defn helper", "newForm": "(defn new-fn\n  [x]\n  (inc x))"},
    {"type": "append", "filePath": "/path/to/other.clj", "code": "(defn added-fn\n  []\n  :done)"},
    {"type": "create", "filePath": "/path/to/new_file.clj", "content": "(ns my.new-file)\n\n(defn init []\n  :ok)"}
  ]
}

Deleting a Form

Use replace with an empty newForm:

{"type": "replace", "filePath": "/path/file.clj", "line": 15, "targetLineText": "(defn obsolete-fn", "newForm": ""}

When Brackets Are Broken

Structural top-level edits are not possible when brackets are unbalanced. Use clojure_balance_brackets to fix brackets — it runs Parinfer and returns corrected text. Fall back to regular text editing tools if needed. If repeated attempts fail, ask the human for help.

Line Comments

Structural tools operate on forms, not line comments (;). Use built-in text editing tools for line comments.

Targeting Forms

The replace and insert edit types locate forms using two parameters: line (1-based line number) and targetLineText (the exact first line of the target form). Accuracy here is critical.

Read the file immediately before editing to get accurate line numbers and exact text. Example — if line 23 starts with (defn process-data, use line: 23 and targetLineText: "(defn process-data".

Scan window: The tool searches for targetLineText within ±2 lines of the given line number. If the offset is greater than 2, the tool fails even if the text exists elsewhere in the file. Previous edits shift line numbers — always re-read before editing.

Rich Comment Forms: Forms directly inside (comment ...) are valid top-level targets. The (comment ...) wrapper itself is also a valid top-level target.

Indentation Is Structure

Parinfer infers closing brackets from indentation. Misaligned code produces structurally wrong results — silently.

;; Wrong — Parinfer closes the map after :foo, :bar is outside
{:foo 1
:bar 2}

;; Correct — :bar aligns with :foo, both inside the map
{:foo 1
 :bar 2}

Rules:

• Map values align with their keys and must be indented past the opening brace
• All form children must be indented past their opening paren
• Elements at the same nesting level share the same indentation

Always ensure proper indentation before passing code to structural tools.

Definition Order

Definitions must precede their call sites in the file. When edits would create a call-before-define situation, rearrange the code. For circular dependencies, factor into separate namespaces, unless in an explicit one-namespace context. declare is a rare last resort.

Edit Process

Verification is mandatory after every batch:

1. Check problems first — review current diagnostics (get_errors or REPL output); fix existing compilation problems before introducing new edits
2. Batch edits — assemble all edits for the call with REPL-verified code
3. Check diagnostics — read post-edit diagnostics from the response; in a hot-reload environment, also check the REPL output log for compile errors
4. Reload — clojure_load_file to confirm the file loads cleanly

Error Recovery

• Broken brackets — Pass the complete file content to clojure_balance_brackets. Accept the output as authoritative. If unresolved, ask the human for help.
• Target text not found — Use grep_search scoped to the file to find the target text's current line number (cheaper than reading the whole file). Plain text mode for exact matches; in regex mode, escape parens as \(.
• Partial batch failure — The tool continues on failure. The response shows which edits succeeded and which failed. Re-read the file, get updated line numbers, retry failed edits in a new batch.
• Scan window miss — The text exists but outside the ±2 window, most commonly because a prior edit shifted line numbers. Re-read the file and retry with updated targeting.

Invariants

• Clojure file edits use clojure_edit_files; line comments use text editing tools
• New .clj/.cljs/.cljc/.bb files are created with clojure_edit_files type create
• Indentation is verified before every structural edit — Parinfer depends on it
• Post-edit diagnostics are read and acted on before proceeding
• targetLineText is always the exact first line of the target form
• After 5 failed retries on the same edit, ask the human for help